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Report for CCDS28509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28509.1 Public Mus musculus 17 Clcn7 23 108 98 CCDS HistoryNCBI Gene:26373Re-query CCDS DB by CCDS ID:28509.1Re-query CCDS DB by GeneID:26373See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040729.8 ENSMUSP00000035964.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040729.8Link to Ensembl Protein Viewer:ENSMUSP00000035964.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040729Re-query CCDS DB by Protein ID:ENSMUSP00000035964
Original member Current member NCBI NM_011930.4 NP_036060.1 Accepted alive Link to Nucleotide Sequence:NM_011930.4Link to Protein Sequence:NP_036060.1Re-query CCDS DB by Nucleotide ID:NM_011930Re-query CCDS DB by Protein ID:NP_036060Link to BLAST:NP_036060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036060.1 803 O70496 803 100% 0 0

Chromosomal Locations for CCDS 28509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25133477 25133614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25144430 25144498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25145569 25145640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25145768 25145833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25146317 25146449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25146770 25146879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25147710 25147790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25149039 25149101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25149211 25149294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25150187 25150280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25150542 25150606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25151116 25151232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25151704 25151758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25152348 25152408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25153016 25153154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25153732 25153825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25155368 25155537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25156801 25156852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25157140 25157267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25157489 25157574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25157872 25158001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25159468 25159527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25159610 25159786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25160130 25160210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25160445 25160531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGCCAACGTCTCTAAGAAAGTGTCTTGGTCCGGCCGAGATCGCGATGATGAGGAGGGGGCGCCACTGC
TTCGAAGGACAGGGCAGCCTGACGAGGAGACGCCGCTGCTGAACGGAGCTGGGCCGGGCGCGCGCCAGTC
TCATTCTGCACTGTTCCGAATCGGACAGATGAACAACGTGGAGCTGGATGACGAGCTCCTGGACCCGGAA
GTCGATCCTCCTCACACCTTCCCCAAGGAGATTCCACACAACGAGAAGCTCCTCTCCCTCAAGTATGAGA
GCCTGGACTATGACAACAGCGAGAATCAGCTCTTCCTGGAGGAGGAAAGACGAATCAACCACACGGCTTT
CCGGACAGTGGAGATCAAGCGCTGGGTTATCTGTGCCCTCATTGGAATCCTCACAGGCCTAGTAGCCTGC
TTCATTGACATTGTAGTGGAGAACCTGGCAGGCCTCAAGTACCGCGTCATCAAGGACAACATTGACAAGT
TCACAGAGAAGGGCGGCCTGTCCTTCTCCCTCCTGCTGTGGGCCACGCTGAACTCTGCCTTCGTACTCGT
GGGGTCTGTGATCGTGGCCTTCATAGAGCCTGTTGCTGCTGGCAGCGGAATCCCTCAGATCAAGTGCTTC
CTCAATGGGGTGAAGATCCCCCACGTGGTGCGGCTCAAGACGCTGGTGATCAAGGTGTCCGGCGTGATTC
TGTCTGTGGTAGGGGGACTGGCTGTGGGAAAGGAAGGGCCAATGATCCACTCAGGATCCGTGATAGCTGC
AGGGATTTCACAGGGAAGGTCAACATCACTCAAGCGAGATTTCAAGATCTTTGAATATTTCCGCAGAGAT
ACAGAGAAGCGGGATTTTGTCTCAGCTGGAGCTGCAGCTGGTGTATCTGCTGCATTTGGAGCCCCTGTGG
GTGGGGTCCTGTTTAGCTTGGAAGAGGGCGCCTCCTTCTGGAATCAGTTCCTGACTTGGAGAATTTTCTT
TGCTTCCATGATTTCCACCTTTACATTGAATTTTGTTCTGAGCATCTACCATGGAAATATGTGGGACCTG
TCCAGCCCTGGCCTCATAAATTTTGGAAGATTTGACTCAGAGAAAATGGCCTACACCATCCATGAGATTC
CAGTCTTCATCGCCATGGGTGTGGTGGGTGGCATTCTTGGAGCTGTGTTCAATGCCTTGAATTACTGGCT
AACCATGTTTCGAATCAGGTACATCCACCGGCCCTGCCTCCAAGTGATTGAGGCCATGCTGGTGGCTGCT
GTCACAGCAACAGTTGCGTTTGTCTTGATTTACTCGTCTCGAGATTGCCAACCCCTGCAGGGGAGCTCCA
TGTCCTACCCACTCCAGCTCTTCTGTGCAGATGGCGAATACAACTCCATGGCCGCAGCCTTCTTTAACAC
CCCTGAGAAGAGCGTTGTCAGCCTGTTCCATGACCCACCAGGCTCCTATAATCCCATGACTCTCGGCCTG
TTTACCCTGGTCTACTTCTTCCTGGCCTGCTGGACCTATGGCCTCACAGTATCTGCTGGTGTCTTCATCC
CATCCCTGCTCATTGGGGCTGCCTGGGGCCGACTCTTTGGCATCTCCCTGTCCTACCTCACAGGGGCAGC
GATCTGGGCAGATCCGGGTAAATACGCCCTGATGGGAGCTGCTGCTCAGCTTGGTGGGATCGTGAGAATG
ACCCTTAGCCTGACAGTCATCATGATGGAGGCCACCAGCAACGTGACCTACGGTTTCCCCATCATGTTGG
TGCTGATGACTGCCAAGATTGTGGGTGATGTTTTCATTGAGGGCCTCTATGACATGCACATCCAGCTGCA
GAGTGTACCCTTCCTACACTGGGAAGCCCCGGTCACCTCACACTCGCTCACGGCCAGGGAAGTAATGAGC
ACACCTGTGACCTGCCTGAGGAGGCGAGAGAAGGTTGGCATCATCGTGGATGTCCTAAGCGACACAGCGT
CTAATCACAACGGATTCCCTGTGGTGGAGGATGTAGGAGACACCCAGCCAGCCAGGCTCCAAGGCTTGAT
CCTGCGTTCCCAGCTTATCGTTCTCTTGAAGCATAAGGTGTTTGTGGAGAGGTCCAACATGGGTTTGGTG
CAGCGGCGACTGAGGCTGAAGGACTTCCGAGATGCCTATCCACGCTTCCCCCCAATCCAGTCCATTCATG
TATCCCAGGATGAGCGTGAATGCACCATGGACCTTTCTGAATTCATGAACCCTTCTCCCTACACTGTGCC
TCAGGAGGCATCTCTTCCTCGAGTGTTCAAGCTCTTCCGGGCTCTGGGCCTGAGGCACCTGGTAGTAGTA
GACAACCACAATCAGGTGGTCGGGCTGGTGACCAGGAAGGACCTAGCAAGATACCGCCTAGGAAAGGGAG
GCCTAGAAGAGCTTTCGCTGGCCCAGACGTGA

Translation (803 aa):
MANVSKKVSWSGRDRDDEEGAPLLRRTGQPDEETPLLNGAGPGARQSHSALFRIGQMNNVELDDELLDPE
VDPPHTFPKEIPHNEKLLSLKYESLDYDNSENQLFLEEERRINHTAFRTVEIKRWVICALIGILTGLVAC
FIDIVVENLAGLKYRVIKDNIDKFTEKGGLSFSLLLWATLNSAFVLVGSVIVAFIEPVAAGSGIPQIKCF
LNGVKIPHVVRLKTLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRD
TEKRDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIYHGNMWDL
SSPGLINFGRFDSEKMAYTIHEIPVFIAMGVVGGILGAVFNALNYWLTMFRIRYIHRPCLQVIEAMLVAA
VTATVAFVLIYSSRDCQPLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTLGL
FTLVYFFLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRM
TLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMS
TPVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPARLQGLILRSQLIVLLKHKVFVERSNMGLV
QRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVV
DNHNQVVGLVTRKDLARYRLGKGGLEELSLAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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