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Report for CCDS56937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56937.1 Public Mus musculus 14 Nek10 23 108 98 CCDS HistoryNCBI Gene:674895Re-query CCDS DB by CCDS ID:56937.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 56937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112630.8 ENSMUSP00000108249.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112630.8Link to Ensembl Protein Viewer:ENSMUSP00000108249.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112630Re-query CCDS DB by Protein ID:ENSMUSP00000108249
Original member Current member EBI ENSMUST00000224491.1 ENSMUSP00000153142.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224491.1Link to Ensembl Protein Viewer:ENSMUSP00000153142.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224491Re-query CCDS DB by Protein ID:ENSMUSP00000153142
Original member NCBI NM_001195229.1 NP_001182158.1 Updated not alive Link to Nucleotide Sequence:NM_001195229.1Link to Protein Sequence:NP_001182158.1Re-query CCDS DB by Nucleotide ID:NM_001195229Re-query CCDS DB by Protein ID:NP_001182158
Current member NCBI NM_001195229.2 NP_001182158.1 Accepted alive Link to Nucleotide Sequence:NM_001195229.2Link to Protein Sequence:NP_001182158.1Re-query CCDS DB by Nucleotide ID:NM_001195229Re-query CCDS DB by Protein ID:NP_001182158Link to BLAST:NP_001182158.1

Chromosomal Locations for CCDS 56937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14820815 14820885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14821107 14821167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14826936 14827066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14828443 14828541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14836143 14836227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14840563 14840604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14842786 14842864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14843847 14843914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14845498 14845577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14846605 14846691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14850760 14850984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14853844 14853983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14855676 14855737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14857783 14857860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14859295 14859359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14860739 14860841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14860926 14861054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14861551 14861688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14863456 14863501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14865393 14865514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14865633 14865735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14885053 14885128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14930575 14930704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14931250 14931320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14937574 14937787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14955495 14955678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14955771 14955857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14957551 14957605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14969475 14969512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14980515 14980615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14986667 14986777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14999084 14999192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 15001012 15001064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 15001145 15001200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 15006645 15006693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGCCCGATCAAGATACAAAGGCGAAGAGCACAGAGAAAACCGCTGATAAGCAACAAGGGACCACCACCA
GGGACTATTCAGATCTTAAAAGACTTCGGTGCCTGTTGAACGTTCAGTCAAGCAAACAGCAGCTTCCAGC
CATTAACTTTGACAGTGCCCAAAATAACATGACAAAGTCTGAGCCAACCATCAGGACAGGGGGACATAGA
GCTCGTGGTCAATGGCATGAGTCCACAGAAGCAGTTGAACTTGAAAATTTTAGTATAAACTATAAGAATG
AAAGGAATTTCAGCAAACATCCACAGCATCAGTTATTTCAAGAGATCTTCACAGCTCTGGTGAGAAACAG
ACTTATATGCAGAGAGTGGGTTAATCGTGCTCCATCCATTCATTTTCTGAGAGTGTTAATTTGTCTGAGG
CTGCTGATGCGGGATCCATGTTATCAGGAAATACTCCATAAATTGGGTGGTATTGAAGACCTTGCTCAGT
ACATGGAGATCGTGGCCAACGAGTACCTGGGCTACGCTGAGGAGCAGCACTGTGTGGACAAGCTGGTCAA
TATGACGTATATTTTTCAAAAACTTGCTGCTGTGAAAGACCAAAGAGAATGGGTTACTGCAAGTGGAGCC
CACAAGACATTAGTGAGTTTGCTTGGTGCCCGAGACACCACTGTCCTCTTGGGTGCTCTGCTGGCACTGG
CCAGCTTAGCAGAGAGTTCAGAGTGTAGGGAGAAGATCAGTGAACTCAACGTAGTAGAAAATCTGTTGAT
GATTCTGCACGAATATGATTTACTCTCCAAAAGACTCACTGCCGAGCTCCTGCGCCTGCTTTGTGCTGAG
CCCCAGATCAAGGAGCAGGTGAAACTCTATGAAGGGATCCCCATCCTGCTCAGTCTGCTTCATTCTGATC
ACTTGAAGCTGCTGTGGAGTGTGATCTGGATTCTGGTCCAGGTGTGTGAGGACCCGGAGACTAGTGTGGA
AATCCGAATCTGGGGTGGCATCAAGCAGCTCCTTCATATTTTACAAGGAGACAGAAATTTTGTTTCTGAC
CGTTCTTCCATCGGAAGCCTGTCCAGTGCAAATGCCGCAGGACGCATCCAGCAGCTTCATTTGTCAGAAG
ATTTAAGCCCTGGGGAAATCGAGGAAAATACTGTCTCTCTCCAAGCAGCCTGCTGTGCTGCCCTCACCGA
GCTGGCCCTCAATGATACCAATGCCCACCAAGTGGTACAGGAAAATGGTGTATATACAATAGCAAAATTA
ATTTTACCAAATAAACAATCGAATGCAGCACAAACTAATCTACTACAGTGTTATGCTTTCAGAACCCTGA
GGTTTCTCTTCAGTATGGAAAGGAACAGGCCACTCTTTAAAAGACTTTTTCCCACCGACCTGTTTGAGAC
CTTCATTGACATAGGACATTACGTTCGTGATATTGGTGCTTATAAGGACTTGGTATCACAGTTGAATTTA
CTATTGGAAGATGAGCTGAAGCAAATTGCTGAGAATATTGAAAGCATCAATCAGAAGAAAGCGCCCTTGA
AGTACATAGGTGACTATGCTGTGTTGGACCACCTTGGAAGTGGAGCTTTTGGCTGTGTTTATAAGGTTAG
AAAGCGTAGTGGTCAAAATCTTTTAGCAATGAAGGAGGTCAATTTGCATAACCCAGCATTTGGAAAGGAT
AAGAAAGACCGAGACAGCAGTGTCAAGAACATTGTTTCTGAATTAACAATAATTAAGGAGCAGCTTTATC
ATCCCAATGTTGTACGTTATTATAAAACATTTTTGGAAAATGACAGGTTGTATATCGTTATGGAGCTGAT
AGAAGGAGCCCCACTTGGAGAGCACTTTAATTCTTTGAAGGAAAAACATCACCATTTCAGTGAAGAGCGA
CTGTGGAAAATATTTATACAGCTGTGCTTAGCTCTTCGGTATCTGCACAAGGAGAAGAGGATTGTTCACA
GAGATCTCACGCCAAACAACATTATGCTGGGAGATAAGGACAAAGTGACAGTTACTGACTTTGGCCTGGC
AAAGCAAAAACAGGAAAGCAGTAAGCTTACATCTATGGTGGGAACGATCCTCTATTCTTGCCCAGAGGTC
CTGAAGAGTGAGCCATATGGAGAGAAGGCCGATGTCTGGGCTGCTGGCTGCATCCTTTATCAGATGGCGA
CTCTAAGTCCTCCCTTCTGTAGCACCAACATGCTCTCCTTGGCTACTAAAATAGTGGAGGCTGTATATGA
GCCAGTGCCAGAAGGTATCTACTCTGAAAAAGTGACAGATACCATTAGAAGGTGCCTCACTCCTGATGCA
GAAGCCCGTCCAGATATTGTAGAAGTTAGTTCCATGATATCAGATGTCATGATGAAGTATTTAGACAGAT
TATCCACATCCCAGCTAGCCTTGGAGAGGAAACTGGAAAGGGAGCGGAGGCGCACACAGAGATACTTTAT
GGAAGCCAACAGGAATGCTGTCACATGTCACCATGAGCTGGCTCTTCTGTCCCAGGAGACCTTTGAGAAG
GCAAGCCTGAGCAGCAGTAGCAGCGGGGCAGCCAGCCTGAAAAGTGAGCTTTCAGAGAGCGCAGAGCTGC
CTGGAGAGGGCTGCCACATCCCCTGCGGGAAGGAGGAGGACAGGGTCTGTGAGGAGGTGCTGTCAGAAGA
CAACTTCCAGCTGGAGAGTGTGGAGAAAGACCTGTATTCTGAGCTAGACGATGAGCTGGACGTCTCGGAC
AACTGTAGCAGCTCCAGTTCAAGCCCCCTAAAGGAGTCTACATTCAGCATTTTAAAGCGAAGTTTCAGTG
CTTCGGGAAGAGAAAGGCACTCACAGGCAAGGGACTTCATTGCTGGACTAGGATCAAGACCAAGACCAGC
ATCTGCAGGCATCGCTGTATCCCAGCGGAAAGTGCGGCAGATCTGCGACCCCATTCAGCAGATCCTGATC
CAGCTACATAAAGTTATCTACATCACGCAGCTCCCTCCAGCTCTGCACCATGATCTGAAGAGAAGGGTTA
TAGAGAGATTCAAGAAGTCCCTGTTCAGTCAGCAGAGCAACCCATGTAACCTGAAATCTGAAATTAAGAA
GTTGTCTCAGGGGTCTCCAGAACCCATCGAGCTGAACTTTCTTACCTCAGATTATCATTCACTTCGCCAT
TCACGAGCTGCAAACAACTGGTCCCCAAGTGACCCCACAGGTTCACCCAGCAGCTTTGAAGTGGAAGAGG
GAGTCACATATGAGCAGATGCAGACTGTGATTGAAGAAGTCCTAGAGGAAAGTGGCTATTACAACTTTAC
AACTAAGAGGTGTCACTCTTTTCCATGGGTGACCAAGAGCTACACAGCCAAAAGATGA

Translation (1115 aa):
MPDQDTKAKSTEKTADKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNNMTKSEPTIRTGGHR
ARGQWHESTEAVELENFSINYKNERNFSKHPQHQLFQEIFTALVRNRLICREWVNRAPSIHFLRVLICLR
LLMRDPCYQEILHKLGGIEDLAQYMEIVANEYLGYAEEQHCVDKLVNMTYIFQKLAAVKDQREWVTASGA
HKTLVSLLGARDTTVLLGALLALASLAESSECREKISELNVVENLLMILHEYDLLSKRLTAELLRLLCAE
PQIKEQVKLYEGIPILLSLLHSDHLKLLWSVIWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSD
RSSIGSLSSANAAGRIQQLHLSEDLSPGEIEENTVSLQAACCAALTELALNDTNAHQVVQENGVYTIAKL
ILPNKQSNAAQTNLLQCYAFRTLRFLFSMERNRPLFKRLFPTDLFETFIDIGHYVRDIGAYKDLVSQLNL
LLEDELKQIAENIESINQKKAPLKYIGDYAVLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFGKD
KKDRDSSVKNIVSELTIIKEQLYHPNVVRYYKTFLENDRLYIVMELIEGAPLGEHFNSLKEKHHHFSEER
LWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKQESSKLTSMVGTILYSCPEV
LKSEPYGEKADVWAAGCILYQMATLSPPFCSTNMLSLATKIVEAVYEPVPEGIYSEKVTDTIRRCLTPDA
EARPDIVEVSSMISDVMMKYLDRLSTSQLALERKLERERRRTQRYFMEANRNAVTCHHELALLSQETFEK
ASLSSSSSGAASLKSELSESAELPGEGCHIPCGKEEDRVCEEVLSEDNFQLESVEKDLYSELDDELDVSD
NCSSSSSSPLKESTFSILKRSFSASGRERHSQARDFIAGLGSRPRPASAGIAVSQRKVRQICDPIQQILI
QLHKVIYITQLPPALHHDLKRRVIERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIELNFLTSDYHSLRH
SRAANNWSPSDPTGSPSSFEVEEGVTYEQMQTVIEEVLEESGYYNFTTKRCHSFPWVTKSYTAKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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