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Report for CCDS22065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22065.1 Public Mus musculus 8 Xab2 23 108 98 CCDS HistoryNCBI Gene:67439Re-query CCDS DB by CCDS ID:22065.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019614.12 ENSMUSP00000019614.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019614.12Link to Ensembl Protein Viewer:ENSMUSP00000019614.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019614Re-query CCDS DB by Protein ID:ENSMUSP00000019614
Original member Current member NCBI NM_026156.2 NP_080432.1 Accepted alive Link to Nucleotide Sequence:NM_026156.2Link to Protein Sequence:NP_080432.1Re-query CCDS DB by Nucleotide ID:NM_026156Re-query CCDS DB by Protein ID:NP_080432Link to BLAST:NP_080432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080432.1 855 Q9DCD2 855 100% 0 0

Chromosomal Locations for CCDS 22065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3610158 3610219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3610311 3610420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3610545 3610674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3610847 3611018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3611114 3611236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3611394 3611584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3611672 3611834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3612963 3613076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3613159 3613290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3613368 3613499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3613590 3613709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3613799 3613950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3614245 3614389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3615994 3616158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3616250 3616384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3618055 3618252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3618543 3618666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3618945 3619093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3621228 3621278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGGTGGTGATGGCGCGAGTTCCGCGTTCCGAGCGGCCGGACCTTGTTTTTGAGGAAGAGGACCTTCCCT
ATGAGGAAGAAATCATGAGGAACCAGTTCTCCGTCAAATGCTGGCTCCGCTACATCGAGTTCAAACAGGG
GGCCCCCAAGCCCCGACTCAACCAGTTGTATGAGCGGGCACTCAAACTGCTTCCCTGCAGCTACAAACTC
TGGTACCGATATCTGAAGGCACGCCGGGCACAGGTGAAACATCGCTGTGTGACTGATCCTGCCTATGAAG
ATGTCAACAACTGCCATGAGAGGGCCTTTGTGTTCATGCACAAGATGCCACGCCTGTGGTTAGACTACTG
CCAGTTTCTCATGGACCAGGGAAGGGTAACACATACCCGCCGCACCTTTGACCGTGCCCTCAGGGCACTG
CCCATCACACAACACTCTCGCATCTGGCCCCTGTATCTACGTTTCCTGCGCTCCCACCCACTGCCTGAGA
CTGCTGTGCGAGGCTACCGTCGCTTCCTCAAGCTGAGTCCTGAGAGCGCTGAGGAATACATCGAGTATCT
CAAATCCAGTGACCGGCTAGACGAGGCTGCACAGCGCCTGGCCACCGTGGTGAATGATGAGCGCTTTGTA
TCCAAGGCTGGTAAATCCAACTACCAGCTGTGGCACGAGCTGTGTGACCTTATCTCCCAGAATCCGGACA
AGGTACAGTCTCTCAATGTGGATGCCATAATCCGTGGTGGGCTCACCCGTTTCACTGACCAGCTGGGCAA
GCTGTGGTGCTCTTTGGCAGACTACTATATCCGCAGTGGCCACTTCGAAAAGGCTCGGGATGTGTATGAG
GAGGCCATCCGCACGGTGATGACCGTGCGGGACTTCACCCAGGTGTTCGACAGCTACGCCCAGTTTGAGG
AGAGCATGATTGCAGCGAAGATGGAGACTGCCTCTGAACTGGGGCGTGAGGAGGAGGACGATGTGGACCT
AGAGCTGCGCCTGGCCCGCTTCGAACAGCTCATCAGCCGACGGCCCCTGCTTCTCAATAGTGTCCTTCTG
CGCCAGAACCCACACCACGTCCACGAGTGGCACAAGCGTGTAGCCCTCCATCAGGGCCGCCCTCGGGAGA
TTATCAACACATACACAGAGGCTGTGCAAACAGTAGACCCCTTCAAAGCCACAGGCAAGCCCCACACACT
GTGGGTTGCATTCGCCAAGTTTTACGAAGACAATGGACAGCTGGATGATGCTCGTGTCATCCTAGAGAAG
GCCACCAAGGTGAACTTCAAGCAGGTGGATGACCTGGCAAGTGTGTGGTGCCAGTGTGGGGAGCTAGAGC
TCAGGCACGAGAATTACGATGAGGCCTTAAAGCTGCTGCGGAAAGCCACGGCTTTGCCTGCCCGCCGAGC
TGAGTACTTTGATGGTTCAGAACCTGTGCAGAACCGTGTATATAAGTCGCTGAAGGTGTGGTCCATGCTT
GCCGACTTGGAGGAAAGCCTGGGCACTTTCCAGTCAACCAAGGCCGTGTATGACCGAATCCTGGACCTGC
GCATAGCCACGCCACAGATCGTTATTAACTATGCCATGTTCCTGGAGGAGCACAAGTACTTTGAGGAGAG
CTTCAAGGCATATGAGCGTGGCATCTCACTGTTCAAGTGGCCCAATGTTTCAGACATCTGGAGCACCTAC
CTGACCAAATTCATCTCGCGCTATGGGGGCCGAAAGCTGGAGCGTGCACGGGATCTCTTTGAGCAGGCAC
TCGATGGCTGCCCACCAAAATATGCCAAGACTTTATACCTGCTCTACGCACAGCTGGAGGAGGAGTGGGG
CCTTGCCCGCCATGCCATGGCTGTGTATGACCGTGCGACCAGGGCAGTGGAGCCAGCACAGCAGTACGAC
ATGTTTAACATCTACATCAAGCGAGCTGCTGAGATCTATGGCGTCACCCACACTCGTGGCATCTACCAGA
AGGCCATTGAGGTGCTGTCTGATGAGCATGCCCGTGAGATGTGCCTGCGGTTTGCAGACATGGAGTGCAA
GCTCGGTGAAATCGACCGCGCCCGGGCCATCTACAGCTTCTGCTCCCAGATCTGTGATCCCCGGACAACT
GGGGCATTCTGGCAAACATGGAAGGACTTTGAGGTTCGGCACGGCAATGAGGATACCATCAGGGAGATGC
TGAGGATACGGCGGAGTGTGCAGGCCACATACAATACTCAGGTCAACTTCATGGCTTCACAGATGCTCAA
GGTGTCGGGCAGTGCCACAGGCACCGTGTCTGACCTGGCTCCTGGGCAGAGTGGCATGGATGACATGAAG
CTGCTGGAACAGAGAGCAGAACAGCTGGCAGCTGAGGCGGAGCGGGACCAGCCCCCCAGGGCCCAGAGCA
AGATCTTCTTTGTGAGGAGTGATGCATCCAGGGAGGAATTGGCAGAGCTGGCTCAGCAGGCCAACCCTGA
GGAGATCCAGCTGGGCGAGGATGAGGACGAGGACGAGATGGACCTGGAGCCCAATGAAGTCCGACTGGAA
CAGCAGAGTGTACCAGCTGCTGTGTTCGGGAGCCTAAAGGAAGACTGA

Translation (855 aa):
MVVMARVPRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKL
WYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRAL
PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFV
SKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYE
EAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLL
RQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSML
ADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTY
LTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYD
MFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT
GAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMK
LLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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