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Report for CCDS29820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29820.1 Public Mus musculus 19 Hoga1 23 108 98 CCDS HistoryNCBI Gene:67432Re-query CCDS DB by CCDS ID:29820.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081714.4 ENSMUSP00000080414.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081714.4Link to Ensembl Protein Viewer:ENSMUSP00000080414.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081714Re-query CCDS DB by Protein ID:ENSMUSP00000080414
Original member Current member NCBI NM_026152.2 NP_080428.1 Accepted alive Link to Nucleotide Sequence:NM_026152.2Link to Protein Sequence:NP_080428.1Re-query CCDS DB by Nucleotide ID:NM_026152Re-query CCDS DB by Protein ID:NP_080428Link to BLAST:NP_080428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080428.1 321 Q9DCU9 321 100% 0 0

Chromosomal Locations for CCDS 29820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42045918 42046110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42059888 42060016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42060167 42060294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42060928 42061062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42061303 42061399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42063192 42063325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42070188 42070337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCTGGGCCCCCAAATTTGGGCCTCCATGAGGCAGGGTCTGAGCAGGGGCTTGTCTAGGAATGTGAAGG
GCAAGAAGGTAGACATTGCCGGCATCTACCCACCCGTGACCACCCCATTCACCGCCACCGCAGAGGTAGA
CTATGGGAAACTGGAAGAGAACCTGAACAGACTGGCCACCTTCCCCTTTCGAGGCTTCGTGGTCCAGGGT
TCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCA
TACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGTCCACGCAAGCCACAGTAGAGATGACTGT
CAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGC
AGCGCTGCCCTCATTCACCACTACACCAAGGTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTG
TCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCAT
CGGCTTGAAGGACAGTGGTGGAGATGTGACCAGGATTGGACTGATAGTTCACAAGACCAGCAAGCAGGAT
TTCCAGGTGTTGGCTGGGTCAGCTGGCTTCCTCCTGGCCAGCTATGCTGTGGGAGCTGTTGGGGGCATAT
GTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGA
AGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCGGTGACCCGGCGCTTTGGAATACCA
GGGCTGAAGAAAACCATGGACTGGTTTGGCTACTATGGAGGTCCCTGCCGCGCCCCGTTGCAGGAGCTGA
GCCCCACAGAGGAGGAGGCACTGCGCTTGGATTTCAGCAACAATGGCTGGCTTTAA

Translation (321 aa):
MLGPQIWASMRQGLSRGLSRNVKGKKVDIAGIYPPVTTPFTATAEVDYGKLEENLNRLATFPFRGFVVQG
STGEFPFLTSLERLEVVSRVRQAIPKDKFLIAGSGCESTQATVEMTVSMAQVGADVAMVVTPCYYRGRMS
SAALIHHYTKVADVSPIPVVLYSVPANTGLELPVDAVVTLSQHPNIIGLKDSGGDVTRIGLIVHKTSKQD
FQVLAGSAGFLLASYAVGAVGGICGLANVLGAQVCQLERLCLTGQWEAAQELQHRLIEPNTAVTRRFGIP
GLKKTMDWFGYYGGPCRAPLQELSPTEEEALRLDFSNNGWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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