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Report for CCDS51701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51701.1 Public Mus musculus 5 4930449I24Rik 23 108 98 CCDS HistoryNCBI Gene:67410Re-query CCDS DB by CCDS ID:51701.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110598.2 ENSMUSP00000106228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110598.2Link to Ensembl Protein Viewer:ENSMUSP00000106228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110598Re-query CCDS DB by Protein ID:ENSMUSP00000106228
Original member Current member NCBI NM_026136.2 NP_080412.1 Accepted alive Link to Nucleotide Sequence:NM_026136.2Link to Protein Sequence:NP_080412.1Re-query CCDS DB by Nucleotide ID:NM_026136Re-query CCDS DB by Protein ID:NP_080412Link to BLAST:NP_080412.1

Chromosomal Locations for CCDS 51701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146502428 146502559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146502743 146502945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146503485 146503532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146504177 146504370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146504622 146505004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGTTCTCCTGTTTCCAGGGTTCCAGAGGCTCCGGCCACAAAAAAGCCAAGAGCGGTTTCCTTGTTCGCT
TTTGGAGACGTTTGATTCGCCCTCTGACACACTTCAGGCATGCTTCCCACAGTGAGCCCAAGGTCTGTTC
TCAAAATGAACAGGAGCCAGACTCTCTGCCCAAGCGCCCCCAGTTCAACTATGACAGCCAAGAATACGTG
GTACAAATGATCCACTACATTCCAGCTGCTATTCAGAAACGTGACCACATCTGTATCACCATATTTCTTG
GCGTCTACCGAACGTATGCCAGCACTTGGGAGGTGCTGGACCTGCTGATGAGAACGTATGCATCCTTCCG
GCCTGACTGTATAAAGGACCAGCAAACTAAGAGAGCCATATTCAGGTTTCTGTTCGGCTGGTTTAAGAAA
TACCCCCAGGATTTTTATGAGTCCCCAGACCTGGCTGTTGTGAGGCAGTTCATTGACTATGTGAAGCGCA
ATGTGCCTTCCTCAGATGTAGATAGAGCCAGGGAGCTGCTCTCCGTGCTGGAAGATCAGGAGGCAATAGA
GCTACAGATTGAGCAAGATTTTGCCACAGCTCCAGAGCCCTCAGAGCAGGATGCCTCTGGGAGGCAGGAG
AGTCTGGCTCCGAGGCCAGCTTCTGAGACAGAGCCACAGGGAGACAAGCAACACCGAGAGGATGCTGAGC
TTGTGAAAGGAGCAGTTCTGGATCCCTTTAAACCAAAAGCCACAATAGAGCTGCATCCGACTTTACATCA
AGCTGTGCCCGCATCAGATGGTTCACTCTCACCTGTAGATGTTACTGCAGATGAGGCGACAGGTGTGGCT
GCAGATGAGGCTGCAGATGTTGCTGCAGATGTTTCACTTGCCAGGCAATTATTCGTGTCTTACACTGTGC
AGTTAGGTACACCAGATTTCGTCATCCCTCTGCCTGAGGTTGACATATAG

Translation (319 aa):
MFSCFQGSRGSGHKKAKSGFLVRFWRRLIRPLTHFRHASHSEPKVCSQNEQEPDSLPKRPQFNYDSQEYV
VQMIHYIPAAIQKRDHICITIFLGVYRTYASTWEVLDLLMRTYASFRPDCIKDQQTKRAIFRFLFGWFKK
YPQDFYESPDLAVVRQFIDYVKRNVPSSDVDRARELLSVLEDQEAIELQIEQDFATAPEPSEQDASGRQE
SLAPRPASETEPQGDKQHREDAELVKGAVLDPFKPKATIELHPTLHQAVPASDGSLSPVDVTADEATGVA
ADEAADVAADVSLARQLFVSYTVQLGTPDFVIPLPEVDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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