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Report for CCDS40010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40010.1 Public Mus musculus 7 3110040N11Rik 23 108 98 CCDS HistoryNCBI Gene:67290Re-query CCDS DB by CCDS ID:40010.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026092.8 ENSMUSP00000026092.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026092.8Link to Ensembl Protein Viewer:ENSMUSP00000026092.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026092Re-query CCDS DB by Protein ID:ENSMUSP00000026092
Original member NCBI NM_026077.4 NP_080353.1 Updated not alive Link to Nucleotide Sequence:NM_026077.4Link to Protein Sequence:NP_080353.1Re-query CCDS DB by Nucleotide ID:NM_026077Re-query CCDS DB by Protein ID:NP_080353
Current member NCBI NM_026077.5 NP_080353.1 Accepted alive Link to Nucleotide Sequence:NM_026077.5Link to Protein Sequence:NP_080353.1Re-query CCDS DB by Nucleotide ID:NM_026077Re-query CCDS DB by Protein ID:NP_080353Link to BLAST:NP_080353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080353.1 126 Q9CRC3 126 100% 0 0

Chromosomal Locations for CCDS 40010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81783043 81783138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81786077 81786204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81788450 81788576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81789355 81789384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTAAGAAAGCCGGTGCGACAAGCAAGGGTAAAAACCAAACCAAAGAACCAGAGACAGCACCTCCTG
CTGCAGGGCCTGTAGCAACTGACCCTAAAGGTTTTGTCACCATAGCCATTCATGCCAAACCTGGCTCCAG
ACAGAACGCTGTGACAGATCTGAGCACTGAGGCCGTTGGTGTGGCCATTGCAGCACCTCCGTCCGAGGGA
GAGGCAAATGCGGAGCTGTGTCGGTACCTCTCCAAGGTCTTGGACCTCAGGAAGAGTGACGTGGTTCTGG
ATAAGGGTGGTAAATCTCGGGAAAAGGTGGTGAAGCTCTTGGCCTCTACAACTCCAGAGGAGGTCTTGGA
GAAGCTGAAAACAGAAGCTGAGAAGAAATAA

Translation (126 aa):
MPKKAGATSKGKNQTKEPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEG
EANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKLKTEAEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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