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Report for CCDS24981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24981.1 Public Mus musculus 11 Med31 23 108 98 CCDS HistoryNCBI Gene:67279Re-query CCDS DB by CCDS ID:24981.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021157.8 ENSMUSP00000021157.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021157.8Link to Ensembl Protein Viewer:ENSMUSP00000021157.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021157Re-query CCDS DB by Protein ID:ENSMUSP00000021157
Original member Current member NCBI NM_026068.2 NP_080344.2 Accepted alive Link to Nucleotide Sequence:NM_026068.2Link to Protein Sequence:NP_080344.2Re-query CCDS DB by Nucleotide ID:NM_026068Re-query CCDS DB by Protein ID:NP_080344Link to BLAST:NP_080344.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080344.2 131 Q9CXU1 131 100% 0 0

Chromosomal Locations for CCDS 24981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72211885 72212077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72213777 72213873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72214138 72214215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72214961 72214988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCCGCGGCCGTCGCTATGGAGACAGATGATGCTGGAAATCGGCTTCGGTTTCAGTTGGAGTTGGAAT
TTGTGCAATGTTTAGCCAACCCAAACTACCTTAATTTTCTTGCCCAAAGAGGTTACTTCAAAGACAAAGC
TTTTGTTAATTATCTTAAGTATTTGCTTTACTGGAAAGAACCAGAATATGCCAAATATCTAAAGTACCCT
CAGTGCTTACATATGTTAGAGCTGCTCCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTG
CGAAGTTCATCGACGAGCAGCAGATTCTGCACTGGCAGCACTACTCTCGGAAGCGGGTGCGTCTTCAGCA
AGCCCTGGCCGAGCAGCAGCAGCAGAATAACACAGCAGGGAAATGA

Translation (131 aa):
MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYP
QCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVRLQQALAEQQQQNNTAGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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