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Report for CCDS79199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79199.1 Public Mus musculus 13 Hnrnpk 23 108 98 CCDS HistoryNCBI Gene:15387Re-query CCDS DB by CCDS ID:79199.1Re-query CCDS DB by GeneID:15387See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116403.8 ENSMUSP00000112104.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116403.8Link to Ensembl Protein Viewer:ENSMUSP00000112104.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116403Re-query CCDS DB by Protein ID:ENSMUSP00000112104
Original member Current member EBI ENSMUST00000225674.1 ENSMUSP00000152935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225674.1Link to Ensembl Protein Viewer:ENSMUSP00000152935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225674Re-query CCDS DB by Protein ID:ENSMUSP00000152935
Original member Current member EBI ENSMUST00000224182.1 ENSMUSP00000153253.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224182.1Link to Ensembl Protein Viewer:ENSMUSP00000153253.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224182Re-query CCDS DB by Protein ID:ENSMUSP00000153253
Original member Current member NCBI NM_001301340.1 NP_001288269.1 Accepted alive Link to Nucleotide Sequence:NM_001301340.1Link to Protein Sequence:NP_001288269.1Re-query CCDS DB by Nucleotide ID:NM_001301340Re-query CCDS DB by Protein ID:NP_001288269Link to BLAST:NP_001288269.1
Original member Current member NCBI NM_001301341.1 NP_001288270.1 Accepted alive Link to Nucleotide Sequence:NM_001301341.1Link to Protein Sequence:NP_001288270.1Re-query CCDS DB by Nucleotide ID:NM_001301341Re-query CCDS DB by Protein ID:NP_001288270Link to BLAST:NP_001288270.1
Original member Current member NCBI NM_001301343.1 NP_001288272.1 Accepted alive Link to Nucleotide Sequence:NM_001301343.1Link to Protein Sequence:NP_001288272.1Re-query CCDS DB by Nucleotide ID:NM_001301343Re-query CCDS DB by Protein ID:NP_001288272Link to BLAST:NP_001288272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288269.1 464 P61979-2 464 100% 0 0
NP_001288270.1 464 P61979-2 464 100% 0 0
NP_001288272.1 464 P61979-2 464 100% 0 0

Chromosomal Locations for CCDS 79199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58392443 58392476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58393196 58393365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58393692 58393774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58393853 58393868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58394076 58394159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58394310 58394364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58394478 58394785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58395165 58395293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58395574 58395687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58396188 58396259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58396827 58396899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58397753 58397796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58399156 58399212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58399893 58399990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58400333 58400390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGAGACCGAACAGCCAGAAGAAACCTTCCCCAACACCGAAACCAATGGTGAATTTGGTAAACGCCCTG
CAGAAGATATGGAAGAGGAGCAAGCCTTTAAAAGATCTAGAAATACTGATGAGATGGTTGAATTGCGCAT
TTTGCTTCAGAGCAAGAATGCTGGAGCAGTGATTGGAAAAGGAGGCAAGAATATTAAGGCTCTCCGTACA
GACTACAATGCCAGTGTTTCAGTCCCAGACAGCAGTGGCCCCGAGCGCATACTGAGTATCAGTGCTGATA
TTGAGACGATTGGAGAAATTCTGAAGAAAATCATCCCTACCTTGGAAGAGGGCCTGCAGTTGCCATCACC
CACTGCAACCAGCCAGCTCCCGCTCGAATCTGATGCTGTGGAATGCTTAAATTACCAACATTATAAAGGA
AGTGACTTTGATTGCGAGTTGAGACTGTTGATTCATCAGAGTCTGGCAGGAGGAATAATTGGTGTTAAAG
GTGCTAAAATCAAAGAACTTCGAGAAAACACTCAGACAACAATCAAGCTTTTCCAGGAGTGCTGCCCTCA
CTCTACTGACAGAGTTGTTCTTATTGGAGGAAAACCTGATAGGGTTGTAGAATGCATCAAGATCATCCTT
GACCTTATATCTGAGTCTCCCATCAAAGGACGTGCACAACCTTATGATCCCAACTTTTATGATGAGACCT
ATGATTATGGTGGTTTTACAATGATGTTTGATGACCGCCGAGGACGACCTGTGGGATTCCCCATGAGGGG
AAGAGGTGGTTTTGACAGAATGCCTCCTGGTCGGGGTGGGCGTCCCATGCCTCCTTCTAGAAGAGATTAT
GATGATATGAGCCCTCGTCGAGGACCTCCACCACCACCACCTGGTCGAGGTGGCCGGGGTGGCAGCAGAG
CCCGGAATCTGCCTCTTCCTCCTCCACCACCACCCAGAGGGGGAGATCTAATGGCTTATGACAGAAGAGG
AAGGCCTGGAGACCGCTATGATGGCATGGTTGGGTTCAGTGCTGATGAAACTTGGGATTCTGCAATTGAC
ACATGGAGCCCATCAGAATGGCAAATGGCTTATGAACCACAGGGTGGTTCTGGATATGACTATTCTTATG
CAGGGGGCCGTGGCTCATATGGTGATCTTGGCGGACCTATTATCACTACACAAGTAACTATTCCCAAAGA
TTTGGCTGGATCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATTCGTCATGAATCTGGAGCATCA
ATCAAAATTGATGAACCTTTAGAAGGATCTGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGA
TACAGAACGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAA

Translation (464 aa):
METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT
DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG
SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL
DLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDY
DDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAID
TWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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