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Report for CCDS22202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22202.1 Public Mus musculus 8 Lsm1 23 108 98 CCDS HistoryNCBI Gene:67207Re-query CCDS DB by CCDS ID:22202.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038421.7 ENSMUSP00000041022.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038421.7Link to Ensembl Protein Viewer:ENSMUSP00000041022.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038421Re-query CCDS DB by Protein ID:ENSMUSP00000041022
Original member Current member NCBI NM_026032.1 NP_080308.1 Accepted alive Link to Nucleotide Sequence:NM_026032.1Link to Protein Sequence:NP_080308.1Re-query CCDS DB by Nucleotide ID:NM_026032Re-query CCDS DB by Protein ID:NP_080308Link to BLAST:NP_080308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080308.1 133 Q8VC85 133 100% 0 0

Chromosomal Locations for CCDS 22202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25785672 25785717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25792157 25792225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25793677 25793792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25801928 25802098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGAACTATATGCCCGGCACCGCCAGCCTCATCGAGGACATCGACAAAAAGCACTTGGTCCTACTTCGAG
ATGGAAGAACACTTATAGGTTTTTTAAGAAGCATTGATCAATTTGCTAACTTAGTGCTCCATCAGACTGT
GGAGCGAATTCATGTGGGCAAAAAGTACGGTGATATTCCTCGAGGGATTTTCGTGGTCAGAGGAGAGAAT
GTGGTCCTACTAGGAGAAATAGACCTGGAGAAGGAGAGTGACACGCCCCTTCAGCAAGTGTCTATTGAAG
AGATCCTAGAGGAACAGAGGGTGCAACAGCAGACCAGACTGGAGGCAGAGAAGCTGAAGGTCCAGACCCT
TAAAGATCGGGGCCTTTCCATTCCTCGCGCAGACACTCTGGACGAGTACTGA

Translation (133 aa):
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGEN
VVLLGEIDLEKESDTPLQQVSIEEILEEQRVQQQTRLEAEKLKVQTLKDRGLSIPRADTLDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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