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Report for CCDS21915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21915.1 Public Mus musculus 7 Ikzf5 23 108 98 CCDS HistoryNCBI Gene:67143Re-query CCDS DB by CCDS ID:21915.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046306.14 ENSMUSP00000035583.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046306.14Link to Ensembl Protein Viewer:ENSMUSP00000035583.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046306Re-query CCDS DB by Protein ID:ENSMUSP00000035583
Original member NCBI NM_175115.4 NP_780324.2 Updated not alive Link to Nucleotide Sequence:NM_175115.4Link to Protein Sequence:NP_780324.2Re-query CCDS DB by Nucleotide ID:NM_175115Re-query CCDS DB by Protein ID:NP_780324
Current member NCBI NM_175115.5 NP_780324.2 Accepted alive Link to Nucleotide Sequence:NM_175115.5Link to Protein Sequence:NP_780324.2Re-query CCDS DB by Nucleotide ID:NM_175115Re-query CCDS DB by Protein ID:NP_780324Link to BLAST:NP_780324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780324.2 419 Q8BU00-1 419 100% 0 0

Chromosomal Locations for CCDS 21915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131391637 131392580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131393755 131393937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131396669 131396801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGGTGAAAAGAAACCAGAGCCTTTGGACTTTGTAAAAGATTTCCAGGAATACCTGACCCAGCAGACGC
ATCATGTGAACATGATTTCGGGATCAGTTAGTGGGGACAAAGAAGCAGAGACTCTTCAGGGAGCTGGAAC
AGATGGCGATCAGAATGGCCTTGATCACCCGTCTGTTGAAGTTTCCCTGGATGAAAACTCAGGAATGTTA
GTAGACGGGTTTGAGAGGACCTTCGATGGGAAGCTCAAGTGTCGGTACTGCAACTATGCCAGCAAAGGAA
CGGCCAGGCTCATTGAGCACATCAGGATCCACACAGGCGAGAAGCCTCACAGGTGTCACTTATGTCCATT
TGCATCTGCTTACGAGCGCCACCTGGAAGCCCATATGCGCTCTCACACTGGGGAAAAACCATACAAATGT
GAATTGTGCTCCTTCCGCTGCAGTGACCGAAGTAACCTGTCCCACCATCGAAGGCGCAAACATAAAATGG
TACCAATTAAAGGTACCAGGTCTTCCTTAAGCAGCAAGAAAATGTGGGGGGTTTTACAAAAGAAAACAAG
CAATCTGGGGTATAGCAGAAGAGCACTAATCAACTTAAGTCCACCTTCCATGGTGGTCCAGAAACCAGAC
TACCTTAATGATTTTACACACGAAATCCCAAATATTCAGACTGACTCCTATGAAGCTATGGCTAAAACTA
CACCAACTGGTGGCCTGCCAAGGGACCCCCAAGAACTCATGGTTGACAACCCTTTGAATCAGCTCTCTAC
TTTAGCAGGACAGTTGTCCAGCTTGCCACCAGAAAACCAAAACCCTGCCTCTCCTGATGTAGATGCCTGC
CCTGATGAAAAGCCTTTCATGATTCAGCAACCCTCTGCCCAAGCAGTTGTCTCTGCTGTGTCAGCAAGTA
TTCCTCAGAGCTCCTCCCCCACAAGTCCGGAACCGCGGCCATCGCATAGTCAGAGGAACTACAGTCCAGT
GGCAGGGCCCAGCAGTGAACCAAGTGCCCACACCAGTACTCCCAGCATAGGAAACAGCCAGCCAAGCACT
CCAGCTCCAACCCTGCCGGTGCAGGATCCTCAGCTTCTACACCACTGCCAGCACTGTGACGTGTACTTTG
CAGACAACGTCCTTTACACTGTCCACATGGGGTGCCATGGGTATGACAGCCCCTTTCAGTGTAACGTATG
TGGGTGCAAATGTAAAGACAAGTACGATTTTGCCTGTCATTTTGCAAGAGGGCAACACAACCAGCACTGA

Translation (419 aa):
MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAETLQGAGTDGDQNGLDHPSVEVSLDENSGML
VDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKC
ELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPD
YLNDFTHEIPNIQTDSYEAMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVDAC
PDEKPFMIQQPSAQAVVSAVSASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPST
PAPTLPVQDPQLLHHCQHCDVYFADNVLYTVHMGCHGYDSPFQCNVCGCKCKDKYDFACHFARGQHNQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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