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Report for CCDS17402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17402.1 Public Mus musculus 3 Trim59 23 108 98 CCDS HistoryNCBI Gene:66949Re-query CCDS DB by CCDS ID:17402.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107802.7 ENSMUSP00000103432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107802.7Link to Ensembl Protein Viewer:ENSMUSP00000103432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107802Re-query CCDS DB by Protein ID:ENSMUSP00000103432
Original member NCBI NM_025863.3 NP_080139.3 Updated not alive Link to Nucleotide Sequence:NM_025863.3Link to Protein Sequence:NP_080139.3Re-query CCDS DB by Nucleotide ID:NM_025863Re-query CCDS DB by Protein ID:NP_080139
Current member NCBI NM_025863.4 NP_080139.3 Accepted alive Link to Nucleotide Sequence:NM_025863.4Link to Protein Sequence:NP_080139.3Re-query CCDS DB by Nucleotide ID:NM_025863Re-query CCDS DB by Protein ID:NP_080139Link to BLAST:NP_080139.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080139.3 403 Q922Y2 403 100% 0 0

Chromosomal Locations for CCDS 17402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69036794 69038005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCACAATTTTGAGGAGGAGTTAACGTGTCCCATCTGTTACAGCATCTTTGAAGATCCCCGTGTACTAC
CATGCTCTCATACATTTTGTAGAAACTGTTTGGAAAATGTTCTTCAGGCATCTGGTAACTTTTACATATG
GAGGCCTCTGCGAATTCCACTCAAGTGTCCTAACTGCAGAAGTATTATTGAAATTGCTTCTACTGGCATA
GAATCCTTACCTGTAAACTTTGCATTACGAGCAATTATTGAAAAGTACCAGCAAGAAGACCACCCAGATG
TTGTCACCTGCCCTGAACACTACAGGCAACCATTAAATGTTTATTGTCTACTAGATAAGAAATTAGTTTG
TGGCCATTGTCTTACTATAGGCCAACATCATGGCCATCCTATAGATGACCTTCAAAGTGCCTATCTGAAA
GAAAAGGATACACCTCAGAAGTTGTTGAAACAGTTAACTGACACACATTGGACAGATATCACTCGCCTTA
TTGAAAAGCTTGAAGAACAGAAATGTCATTCTGAGAAAATAGTTCAAGGTGATAAGGAAGTTGTTCTCCA
GTATTTTAAGGAGCTAATTGATACATTAGAACAGAAAAAAAAGTATTTTTTGGCAGCTCTTTGTGATGTT
GGCAAAATGATTAATCAAGAATACACTCCACAGATTCAAGGAATGAAGGAGATAAGGGAACAACAACTTG
AATTAATGACAATAACGACATCTTTACAAGATGAGTCTCCACTTAAATTTCTGGAAAAAATTGATGAAGT
CCGCCAACGTGTGCAGATGTTGAAACAGAGACCACTTCCTGAGGTCCAGCCTGTTGAAATTTATCCTCGA
GTAAGCAATGTATTAAAAGAAGAGTGGAGCAGAATAGAAATTGGACGTATTAAGAAAGCTGTTATTCCTG
AAATGAGAGTTTCTTCAAAAAGAACGCCATGTTCCTGGTCTGATAATGATGAAAAAGAAATGGAACTTTT
TAAAATTTTAAACATTGCTATAGTTTCACTCATTTCAGTGATACTAATGTTGATACTCCTTTTCAACCAT
CACATAATAACATTCTTAAATGAAATCACTTCAATATGTTTCTCTGAAGTCTTTCTCTCTGTTTACCAGA
GTTTATCTAAGAACTTATATGACTTAAACAATACAGTGTGTTACACTTTATATTTGTTAAAGGAATTTAT
GTGGAAAATAGTTTCTCGTTGA

Translation (403 aa):
MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCRSIIEIASTGI
ESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLK
EKDTPQKLLKQLTDTHWTDITRLIEKLEEQKCHSEKIVQGDKEVVLQYFKELIDTLEQKKKYFLAALCDV
GKMINQEYTPQIQGMKEIREQQLELMTITTSLQDESPLKFLEKIDEVRQRVQMLKQRPLPEVQPVEIYPR
VSNVLKEEWSRIEIGRIKKAVIPEMRVSSKRTPCSWSDNDEKEMELFKILNIAIVSLISVILMLILLFNH
HIITFLNEITSICFSEVFLSVYQSLSKNLYDLNNTVCYTLYLLKEFMWKIVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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