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Report for CCDS40567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40567.1 Public Mus musculus 9 Acad8 23 108 98 CCDS HistoryNCBI Gene:66948Re-query CCDS DB by CCDS ID:40567.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060513.7 ENSMUSP00000054370.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060513.7Link to Ensembl Protein Viewer:ENSMUSP00000054370.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060513Re-query CCDS DB by Protein ID:ENSMUSP00000054370
Original member Current member NCBI NM_025862.2 NP_080138.2 Accepted alive Link to Nucleotide Sequence:NM_025862.2Link to Protein Sequence:NP_080138.2Re-query CCDS DB by Nucleotide ID:NM_025862Re-query CCDS DB by Protein ID:NP_080138Link to BLAST:NP_080138.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080138.2 413 Q9D7B6 413 99.7579% 0 1

Chromosomal Locations for CCDS 40567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26975708 26975760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26977556 26977658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26978311 26978463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26978985 26979082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26979176 26979311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26985463 26985600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26990120 26990196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26990583 26990692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26991240 26991409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26992160 26992260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26999394 26999496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGCGATGTTGCGGTCCGGATACAGGCGCTTTGGCTGTCTGCGCGCGGCACTCAAGTCCCTGGCTCAGA
CCCACCACCGGAGCATCACCTTCTGCATCGATCCTTCCTTGGGGCTAAATGAAGAACAGAAAGGATTTCA
GAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAGCTG
TTCCCTGTGGATGTGATGCGGAAGGCTGCACAGCTGGGATTTGGGGGGGTCTATGTGCGAACAGATGTGG
GTGGATCTGGACTGTCTCGCCTTGATACTTCTGTCATCTTTGAAGCCTTGGCCACAGGCTGCACCAGCAC
CACTGCCTATATAAGCATCCACAACATGTGTGCCTGGATGATTGATAGCTTTGGAAATGAGGAACAGAGG
CACAAATTTTGCCCACCGCTCTGTACCATGGAGAAGTTTGCTTCCTACTGCCTCACTGAACCAGGCAGTG
GGAGTGATGCTGCATCTCTTCTGACCTCAGCTAAACAACAAGGAGATCATTACATCCTCAATGGTTCCAA
GGCCTTCATCAGTGGGGGAGGTGAGTCAGACATCTATGTGGTCATGTGCCGAACTGGTGAGTCTGGCGCC
AAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGGAGAAGAAGG
TGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATCTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGGAT
TGGGACCGAGGGGCAGGGTTTTCTCATCGCCATGAAAGGACTGAATGGTGGAAGGATCAATGTTGCATCC
TGCTCTCTGGGAGCCGCTCATGCTTCAGTTATCCTAACCCAAGAACACCTCAAGGTCCGCAAGCAGTTTG
GAGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTC
CCGGCTGATGATCCGTACTGCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGATGCAGTGGCCCTGTGTTCC
ATGGCCAAGCTCTTTGCTACAGAGGAGTGCTTTGCTATCTGCAACCAGGCTTTGCAGATGCATGGGGGCT
ACGGCTATCTGAAGGACTATGCTGTTCAACAGTATATGCGGGACTCCAGGGTCCACCAGATCCTAGAAGG
TAGCAATGAAGTGATGAGGATGCTGATCTCTCGAAACCTGCTTCAGGACTAG

Translation (413 aa):
MAMLRSGYRRFGCLRAALKSLAQTHHRSITFCIDPSLGLNEEQKGFQKVAFDFAAREMAPNMAEWDQKEL
FPVDVMRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQR
HKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGGGESDIYVVMCRTGESGA
KGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGTEGQGFLIAMKGLNGGRINVAS
CSLGAAHASVILTQEHLKVRKQFGAPLARSQYLQFQLADMATKLVASRLMIRTAAVALQEEREDAVALCS
MAKLFATEECFAICNQALQMHGGYGYLKDYAVQQYMRDSRVHQILEGSNEVMRMLISRNLLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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