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Report for CCDS16127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16127.1 Public Mus musculus 2 Cir1 23 108 98 CCDS HistoryNCBI Gene:66935Re-query CCDS DB by CCDS ID:16127.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058615.9 ENSMUSP00000049834.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058615.9Link to Ensembl Protein Viewer:ENSMUSP00000049834.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000058615Re-query CCDS DB by Protein ID:ENSMUSP00000049834
Original member NCBI NM_025854.3 NP_080130.2 Updated not alive Link to Nucleotide Sequence:NM_025854.3Link to Protein Sequence:NP_080130.2Re-query CCDS DB by Nucleotide ID:NM_025854Re-query CCDS DB by Protein ID:NP_080130
Current member NCBI NM_025854.4 NP_080130.2 Accepted alive Link to Nucleotide Sequence:NM_025854.4Link to Protein Sequence:NP_080130.2Re-query CCDS DB by Nucleotide ID:NM_025854Re-query CCDS DB by Protein ID:NP_080130Link to BLAST:NP_080130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080130.2 450 Q9DA19-1 450 100% 0 0

Chromosomal Locations for CCDS 16127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73284360 73285035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73286338 73286423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73287609 73287715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73303740 73303857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73305890 73305938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73306277 73306341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73306428 73306438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73306855 73306928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73310457 73310551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73312417 73312488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGGGAAGTCATTCGCCAATTTCATGTGTAAGAAGGACTTCCATCCTGCGTCCAAATCCAACATCAAGA
AGGTATGGATGGCAGAACAGAAAATATCGTATGATAAAAAGAAACAAGAAGAATTAATGCAACAGTACCT
TAAAGAGCAGGAGTCGTATGATAACAGATTGCTTATGGGAGATGAACGTGTGAAGAATGGCCTGAATTTC
ATGTACGAGGCCCCACCAGGAGTTAAGAAAGAAAACAAAGAGAAAGAAGAAACGGAAGGAGAGACCGAGT
ACAAGTTTGAATGGCAGAAAGGCGCTCCGAGAGAAAAATATGCCAAAGATGACATGAACATCAGAGATCA
GCCCTTTGGTATTCAGGTTCGAAATGTAAGGTGTATTAAATGTCACAAGTGGGGCCATGTGAACACAGAT
CGAGAGTGTCCCTTGTTTGGTCTTTCTGGGATCAATGCAAGTTCAGTTCCTACTGATGGCTCAGGGCCGT
CGATGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATGTACTGGG
GAGAAACTTGACCGCAAATGATCCATCACAGGACTATGTCGCAAGTGACTGTGAAGAAGACCCTGAAGTT
GAGTTCTTAAAGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACTTGAAAAGA
AAAAAAAGAAAAAGAAAAGTGATAAGAAAAAGAAGAAGTTACAGAAGAGCAAAAATAAACACAAGAAACG
TAAAAACAAATCCCCTTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCT
TCCTCTTCCTCCTCCTCGGAGACATCAGATAGCAGCAGTGAGAGTGATAACAAAGAAAAGAAAAGAGAGA
AAGAGAAGAGGAAGAAGAAGAAGAAAACCAAATGTTCTGAAAGTAAATCCAGTGACTGTAAGGAGGACAA
GCCTAAGAACATGCTTTACGAAGAACTTTCCAGCAGTCACAGTGACAGGGGAAAAGCCCAGGAAAAATTA
AGGTTTCCAAAACAAGAGAGTTCTGGGGAGAATAGCATGTGGGTCCATTCTGCTTCTGACCGGACATCCA
GAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATCGGGGAATCCGAAGTCGGAGCCGTAG
CCGGGCTGAGAGCAGCCGGCGAAGCAGAAGCAGGAGTCCTTACCGTCAGAAGCACAGGGAGGTGAGGAGC
CGGCCACACCGGAGCCCTAGTGAAGAGCAGAAGGGAAGAAAGGGCACCAGAAGCCATGGTGAAGGTGACC
ATAGAAGAGAGCACGTGCGCTGA

Translation (450 aa):
MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMGDERVKNGLNF
MYEAPPGVKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTD
RECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVLGRNLTANDPSQDYVASDCEEDPEV
EFLKSLTTKQKQKLLRKLDRLEKKKKKKKSDKKKKKLQKSKNKHKKRKNKSPSSSSSSSSSSSSSSSSSS
SSSSSSETSDSSSESDNKEKKREKEKRKKKKKTKCSESKSSDCKEDKPKNMLYEELSSSHSDRGKAQEKL
RFPKQESSGENSMWVHSASDRTSRSHRHSPEKKGSDRNRGIRSRSRSRAESSRRSRSRSPYRQKHREVRS
RPHRSPSEEQKGRKGTRSHGEGDHRREHVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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