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Report for CCDS23335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23335.1 Public Mus musculus 9 Rab27a 23 108 98 CCDS HistoryNCBI Gene:11891Re-query CCDS DB by CCDS ID:23335.1Re-query CCDS DB by GeneID:11891See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034722.4 ENSMUSP00000034722.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034722.4Link to Ensembl Protein Viewer:ENSMUSP00000034722.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034722Re-query CCDS DB by Protein ID:ENSMUSP00000034722
Original member Current member EBI ENSMUST00000184146.7 ENSMUSP00000139310.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184146.7Link to Ensembl Protein Viewer:ENSMUSP00000139310.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184146Re-query CCDS DB by Protein ID:ENSMUSP00000139310
Original member Current member NCBI NM_001301230.1 NP_001288159.1 Accepted alive Link to Nucleotide Sequence:NM_001301230.1Link to Protein Sequence:NP_001288159.1Re-query CCDS DB by Nucleotide ID:NM_001301230Re-query CCDS DB by Protein ID:NP_001288159Link to BLAST:NP_001288159.1
Original member Current member NCBI NM_001301232.1 NP_001288161.1 Accepted alive Link to Nucleotide Sequence:NM_001301232.1Link to Protein Sequence:NP_001288161.1Re-query CCDS DB by Nucleotide ID:NM_001301232Re-query CCDS DB by Protein ID:NP_001288161Link to BLAST:NP_001288161.1
Original member Current member NCBI NM_023635.6 NP_076124.1 Accepted alive Link to Nucleotide Sequence:NM_023635.6Link to Protein Sequence:NP_076124.1Re-query CCDS DB by Nucleotide ID:NM_023635Re-query CCDS DB by Protein ID:NP_076124Link to BLAST:NP_076124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288159.1 221 Q9ERI2 221 100% 0 0
NP_001288161.1 221 Q9ERI2 221 100% 0 0
NP_076124.1 221 Q9ERI2 221 100% 0 0

Chromosomal Locations for CCDS 23335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 73075415 73075567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73082402 73082487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73084931 73085034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73087077 73087200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73095258 73095456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTCGGATGGAGATTACGATTACCTCATCAAGTTCTTGGCCTTGGGAGACTCTGGGGTAGGGAAGACCA
GTGTACTCTACCAGTACACTGATGGCAAGTTCAACTCCAAATTCATCACCACAGTGGGCATTGATTTCAG
GGAAAAGAGAGTGGTGTACAGAGCCAATGGGCCAGATGGAGCTGTGGGCCGAGGCCAGAGAATCCACCTG
CAGTTATGGGACACGGCGGGGCAGGAGAGGTTTCGTAGCTTAACCACTGCATTCTTCAGGGACGCTATGG
GTTTCCTGCTTCTGTTCGACCTGACAAATGAGCAAAGTTTCCTCAATGTCCGAAACTGGATAAGCCAGCT
ACAGATGCACGCGTACTGTGAAAACCCAGATATAGTGCTGTGTGGAAATAAGAGTGACCTGGAAGACCAG
AGGGCAGTGAAAGAGGAGGAGGCCCGGGAACTTGCCGAGAAGTACGGAATCCCCTATTTTGAAACCAGTG
CTGCCAACGGGACAAACATAAGCCACGCGATTGAGATGCTCCTGGACCTGATCATGAAGCGGATGGAGCG
GTGTGTGGACAAGTCCTGGATTCCGGAGGGAGTGGTACGGTCCAACGGCCATACCTCTGCGGATCAGCTA
AGTGAGGAGAAGGAGAAGGGGTTGTGTGGCTGTTGA

Translation (221 aa):
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL
QLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQ
RAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHTSADQL
SEEKEKGLCGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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