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Report for CCDS79853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79853.1 Public Mus musculus 2 Zfp442 23 108 98 CCDS HistoryNCBI Gene:668923Re-query CCDS DB by CCDS ID:79853.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109916.7 ENSMUSP00000105542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109916.7Link to Ensembl Protein Viewer:ENSMUSP00000105542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109916Re-query CCDS DB by Protein ID:ENSMUSP00000105542
Original member Current member NCBI NM_001310645.1 NP_001297574.1 Accepted alive Link to Nucleotide Sequence:NM_001310645.1Link to Protein Sequence:NP_001297574.1Re-query CCDS DB by Nucleotide ID:NM_001310645Re-query CCDS DB by Protein ID:NP_001297574Link to BLAST:NP_001297574.1

Chromosomal Locations for CCDS 79853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150407977 150409789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150410941 150411001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150411211 150411337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150451402 150451404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGGTGTTGTGACCTATGATGATGTGCATGTGAACTTCACTCAGGAAGAGTGGGCTTTGCTGGATTCTT
CTCAGAAGAATCTCTACAGAGATGTGATGCTGGAGACCTACAGGAATCTTGCTGCTATAGGCTACAGTTG
GGAAGACCATAATCCTGAAGAACATTTTCAAAGTTCTAGAAGACATGGAAGGCATGAAAAAAGTCATATT
GAAGAGAAACCCTCTGAATTTACTCAATGTGGTAAAGTCTTTGCGTATCAGAGCCATCCTCAGGGGCATC
AACAAATTCATACTGGAGAGAAACCCTATGAAGTTATTCAATATCTTGAGGCATTTGCATATCACAGTAG
TCTCCAAATACATAAAAGAACACATGGTGGAGACAAACACTATAAGATTAATGAATGTGGTAAAGCCTTT
GCATGTCACAATTCTCTTCAAAGGTATAAAAGAGTTCATACAGGTGAGAAACTTTATGAATGTAATCAAT
GTGGTACTGACTTTGCACAACACAGTCATCTTCAACAGCATGAAAGAATGCATACTGTTAAATGTAAGCA
AAGTGGAAAAGACTTTGCATGTTATACTAATCTCCAAATATATCAAAGAACGCATACTGGAGAGAAACCT
TATGAATGTATATTCTGTGATAAAACCTTTATACATCACAGTCATCTTGAAAGGCATGAAAGAATTCATA
CTGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTTTCACAAAACAGCAGTCTCCAATTACA
TAAAAGAACACATACTGGAGAGAAACCCTATGAATGTAAGCAATGTGGTAAATCCTTTGCATGTCAGAGT
GGTCTCCAACAGCATAAAAAAACACATCATGGAGAGAAATCTTATGAATGTAAACGATGTGGTAAAGCCT
TTGCATGTCAAAGTGATCTGCAACAGCATAAAAGAACACATACTGGAGAGAAATCCTATGAATGTAACCA
GTGTGATAAAGCCTTTGCTCTTCGCTGTCATCTTCGAAGGCATCAAAGAATTCATACTGTAGAGAAACCC
TATAAATGTAATCAATGTGGTAAATTCTTTGCACAAAGCAACCATTTTGTACGACATAAAAGAACACATA
CTGGAGAGAAACCCTATGAATGTAATCAATGTGATAAAGCCTTTGCATGTCAAACTAGTCTCCTGTATCA
TAAAAGAACACATTCTGGAGAGAAACTCTATGTCTGTAATGAATGTGGCAAAGCCTTTGTACTTCAAAGT
TATCTTCAGATACATAAAAGAACACATACTGGAGAGAAACCCTTTGGATGTGACCAGTGTGATAAGGCAT
TTGCACAAAACAGTCATCTCCTAACACATAAAAGAACACATACTGGAGAGAAACCCTATGAATGTGAGCA
ATGTGGCAAAGCCTTTGCAAGTAATAGTAATCTCCAAGTGCATAAAAAAACGCACACTGGAGAGAAACCC
TATGAATGTAAGCAGTGTGGTAAAGCCTTTGGGTTTCAAAGTGGTCTGCAAAAGCATAAACGAACACATA
CTGGAGAGAAACCCTATGAATGTAATCAGTGTGATAAGGCATTTGCATGTCAAGCTAGTCTCCTGAATCA
TAAACGATCACACACTGGTGAGAAGCCATATGAATGTAGTGAATGTGGTAAAGCGTTTGTACTTCACAGT
TATCTTCAAATACATAAAAGGATACATACTGGAGAGAAACCCTTTGAATGTGACCAATGTGATAAAGCCT
TTGCTCGAAACACTCTTCTCCTAAAACATAAAAGAATACATACTGGGCAGAAACCCTATGGATGCAAGCA
ATGTGGCAAAGCCTTTGCAAATCACAGTAATCTCCAAGTGCATAAAAGAACACATACTGGAGAGAAGCCC
TACGAATGTAAGCACTGTGGTAAACCCTTCAAGTGTCAAAGTGGTCTGCAGTATCATAAAAGAACACAAC
ACATACAGGAGAGAAACCCTATGACTGTAATCAATGTGATCTAG

Translation (667 aa):
MGVVTYDDVHVNFTQEEWALLDSSQKNLYRDVMLETYRNLAAIGYSWEDHNPEEHFQSSRRHGRHEKSHI
EEKPSEFTQCGKVFAYQSHPQGHQQIHTGEKPYEVIQYLEAFAYHSSLQIHKRTHGGDKHYKINECGKAF
ACHNSLQRYKRVHTGEKLYECNQCGTDFAQHSHLQQHERMHTVKCKQSGKDFACYTNLQIYQRTHTGEKP
YECIFCDKTFIHHSHLERHERIHTGEKPYECNQCGKAFSQNSSLQLHKRTHTGEKPYECKQCGKSFACQS
GLQQHKKTHHGEKSYECKRCGKAFACQSDLQQHKRTHTGEKSYECNQCDKAFALRCHLRRHQRIHTVEKP
YKCNQCGKFFAQSNHFVRHKRTHTGEKPYECNQCDKAFACQTSLLYHKRTHSGEKLYVCNECGKAFVLQS
YLQIHKRTHTGEKPFGCDQCDKAFAQNSHLLTHKRTHTGEKPYECEQCGKAFASNSNLQVHKKTHTGEKP
YECKQCGKAFGFQSGLQKHKRTHTGEKPYECNQCDKAFACQASLLNHKRSHTGEKPYECSECGKAFVLHS
YLQIHKRIHTGEKPFECDQCDKAFARNTLLLKHKRIHTGQKPYGCKQCGKAFANHSNLQVHKRTHTGEKP
YECKHCGKPFKCQSGLQYHKRTQHIQERNPMTVINVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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