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Report for CCDS25193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25193.1 Public Mus musculus 11 Appbp2 23 108 98 CCDS HistoryNCBI Gene:66884Re-query CCDS DB by CCDS ID:25193.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018625.9 ENSMUSP00000018625.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018625.9Link to Ensembl Protein Viewer:ENSMUSP00000018625.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000018625Re-query CCDS DB by Protein ID:ENSMUSP00000018625
Original member Current member NCBI NM_025825.3 NP_080101.1 Accepted alive Link to Nucleotide Sequence:NM_025825.3Link to Protein Sequence:NP_080101.1Re-query CCDS DB by Nucleotide ID:NM_025825Re-query CCDS DB by Protein ID:NP_080101Link to BLAST:NP_080101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080101.1 585 Q9DAX9 585 100% 0 0

Chromosomal Locations for CCDS 25193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85191646 85191899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85194575 85194740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85196066 85196256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85198066 85198151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85200294 85200418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85201416 85201521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85201603 85201670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85204234 85204323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85209940 85210108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85214236 85214359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85215110 85215261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85216436 85216524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85234672 85234809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGCGGCCGTGGAGCTCGAGTGGATCCCGGAGACGCTCTACAACACCGCCATCTCCGCTGTCGTGGACA
ACTACATCCGCTCGCGCCGCGACATCCGCTCCTTGCCGGAGAATATCCAGTTCGACGTTTACTACAAGCT
TTACCAACAGGGACGCTTGTGTCAGCTCGGCAGTGAATTCTGTGAATTGGAAGTTTTTGCTAAAGTTTTG
AGAGCTTTGGATAAAAGACATTTGCTCCACCACTGTTTTCAGGCTCTGATGGACCATGGCGTTAAGGTAG
CTTCCGTCTTGGCCTACTCCTTCAGTAGACGGTGCTCTTACATAGCAGAGTCCGACGCTGCAGTAAAGGA
GAAGGCCATCCAGGTTGGCTTTGTCTTAGGTGGCTTTCTTTCTGATGCAGGCTGGTACAGTGATGCTGAA
AAGGTTTTTCTGTCCTGCCTTCAGTTGTGTACGCTACATGATGAGATGCTCCACTGGTTCCGAGCAGTGG
AGTGTTGTGTGAGGTTGCTTCATGTGCGAAATGGAAATTGTAAATATCATCTAGGTGAAGAAACATTTAA
ATTAGCTCAGACATACATGGATAAGCTGTCTAAACATGGCCAGCAAGCAAATAGAGCTGCTCTCTACGGA
GAACTATGTGCACTCCTGTTTGCAAAAAGCCACTATGATGAGGCATACAAGTGGTGCGTTGAGGCAATGA
AGGAAATTACAGCAGGCTTACCAGTCAAAGTTGTGGTGGATGTTTTAAGACAAGCTTCTAAGGCTTGTGT
AGTCAAACGTGAATTTAAGAAGGCAGAACAGTTAATTAAACATGCAGTGTATTTGGCACGAGATCATTTC
GGATCCAAACACCCAAAATACTCTGACACACTGCTAGATTATGGGTTCTACTTACTCAATGTAGACAATA
TCTGTCAGTCTGTTGCAATTTACCAGGCAGCCCTCGACATTCGACAGTCAGTGTTTGGTGGCAAAAATAT
TCATGTAGCAACAGCTCATGAAGACCTGGCCTACTCTTCCTACGTTCACCAGTACAGCTCTGGAAAATTC
GACAATGCACTATTTCATGCAGAAAGAGCCATTGGTATCATTACTCACATCCTACCTGAAGATCATCTTC
TTCTGGCTTCTTCAAAGAGGGTGAAAGCACTTATTCTAGAGGAGATTGCGATTGACTGTCACAACAAGGA
GACGGAGCAGCGGCTGCTTCAGGAGGCACACGACTTGCACTTGTCTTCGCTGCAGCTGGCTAAGAAAGCA
TTTGGGGAATTTAATGTACAGACTGCAAAGCACTATGGGAACCTCGGAAGGCTCTATCAGTCAATGAGAA
AATTTAAGGAAGCTGAAGAAATGCACATAAAAGCAATTCAGATTAAGGAGCAGCTCCTTGGCCAAGAAGA
TTATGAAGTGGCCCTTTCAGTGGGACACCTGGCATCTCTGTATAATTATGACATGAATCAGTATGAAAAT
GCTGAGAAACTGTACCTGCGGTCGATAGCCATTGGGAAGAAACTGTTTGGTGAAGGCTACAGTGGACTAG
AATATGATTACCGGGGCCTCATTAAACTTTACAACTCCATTGGGAATTATGAGAAAGTGTTCGAGTATCA
CAACGTTCTGTCTAACTGGAACCGGTTGCGAGATCGACAGTATTCAGTGACCGATGCCCTTGAAGACGTC
AGCAGCAGCCCCCAGTCCACTGAAGAAGTGGTGCAGTCCTTTCTGATGGCTCAGAATGTTGAGGGACCAA
GCTGCTGA

Translation (585 aa):
MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEFCELEVFAKVL
RALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAIQVGFVLGGFLSDAGWYSDAE
KVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQTYMDKLSKHGQQANRAALYG
ELCALLFAKSHYDEAYKWCVEAMKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHF
GSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKF
DNALFHAERAIGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKA
FGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYEN
AEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRLRDRQYSVTDALEDV
SSSPQSTEEVVQSFLMAQNVEGPSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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