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Report for CCDS23764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23764.1 Public Mus musculus 10 Hint3 23 108 98 CCDS HistoryNCBI Gene:66847Re-query CCDS DB by CCDS ID:23764.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161074.7 ENSMUSP00000125552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161074.7Link to Ensembl Protein Viewer:ENSMUSP00000125552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161074Re-query CCDS DB by Protein ID:ENSMUSP00000125552
Original member Current member NCBI NM_025798.3 NP_080074.1 Accepted alive Link to Nucleotide Sequence:NM_025798.3Link to Protein Sequence:NP_080074.1Re-query CCDS DB by Nucleotide ID:NM_025798Re-query CCDS DB by Protein ID:NP_080074Link to BLAST:NP_080074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080074.1 165 Q9CPS6 165 100% 0 0

Chromosomal Locations for CCDS 23764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 30608391 30608423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30610317 30610443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30611648 30611717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30614713 30614830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30618203 30618352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCTGAGAAGCAAGCGGGCTTGGTCGGAGAGCCGGATCCCGAGGGGTCCTCGCCTGGGACCTCGGAGT
CCTGGAACTATGACAGCAACTGCGTGTTCTGCCGCGTGGCGGCGGGTCAGGAACCCAAAACTGAACTCTT
TCACTGTGAGAATGAAGACCTGGTTTGTTTCAAAGATATCAAACCAGCGGCACTTTATCATTATCTCGTC
GTGCCAAAGAAGCATATTGGAAGTTGCAAGGATCTAAACAAAGATCACATAGAAATGGTCGAGAGCATGG
TGGCTGCTGGGAAAACCATGCTTGAGAGGAATAATTTCACTGACTTCACAGATGTAAGAATGGGTTTCCA
TGTTCCTCCATTCTGTTCCATCTCTCATCTGCACCTTCATGTGATAGCACCAGTCAAAGAGTTTGGCTTC
TTATCAAAGCTGGTTTACAGGCAGGATTCCTACTGGTTTGTCACAGTTGATTACTTGCTTGAAAAACTAA
GAAAATAA

Translation (165 aa):
MAEKQAGLVGEPDPEGSSPGTSESWNYDSNCVFCRVAAGQEPKTELFHCENEDLVCFKDIKPAALYHYLV
VPKKHIGSCKDLNKDHIEMVESMVAAGKTMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIAPVKEFGF
LSKLVYRQDSYWFVTVDYLLEKLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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