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Report for CCDS24561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24561.1 Public Mus musculus 11 Ttc1 23 108 98 CCDS HistoryNCBI Gene:66827Re-query CCDS DB by CCDS ID:24561.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048578.2 ENSMUSP00000040779.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048578.2Link to Ensembl Protein Viewer:ENSMUSP00000040779.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048578Re-query CCDS DB by Protein ID:ENSMUSP00000040779
Original member Current member NCBI NM_133795.2 NP_598556.1 Accepted alive Link to Nucleotide Sequence:NM_133795.2Link to Protein Sequence:NP_598556.1Re-query CCDS DB by Nucleotide ID:NM_133795Re-query CCDS DB by Protein ID:NP_598556Link to BLAST:NP_598556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598556.1 292 Q91Z38 292 100% 0 0

Chromosomal Locations for CCDS 24561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 43730474 43730607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43736419 43736473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43737867 43738015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43738797 43738833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43739717 43739829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43741761 43741821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43745085 43745414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGAGGAAAAGTCAGAAGACTGTAAGGTCCCAGAAGATCTGTTCAATGGTCTGAAAGTCGCAGATCCTC
AAGAAGGAGAGTCTGCCAGCCCCATGGTTTCTGATCCCAAGGGTCAGCACTGCCAGAGCAAGCTGCCGAA
GGCTGCTGAAGCCCATCCACAGGACGACCATGTTGAAGAGGAATGTTTTCATGACTGTAGTGCCTCGTTT
GAGGAGGAACAGCCAGGGGCGCACGTGGCAGGGAGCAAAGCCAGCGATGATTCTAGTTCTGAACTGGATG
AAGAATACCTAATTGAACTGGAAAAAAACATGCCAGAAGAAGAGAAACAGAAAAGAAGAGAGGAGAGCGC
TAAACTAAAGGAGGAGGGGAATGAGCGGTTTAAGAGAGGAGATTACATGGAAGCTGAGAGTTCTTACAGT
CAAGCCCTTCAGATGTGCCCAGCCTGTTTCCAGAAAGATCGATCTGTTCTGTTTTCAAATAGAGCTGCTG
CGAGGATGAAACAGGACAAGAAGGAGACGGCCATCACTGACTGCAGCAAAGCAATTCAGTTAAACCCCAC
CTATATCCGTGCAATACTGAGGAGAGCTGAATTATATGAGAAAACAGACAAACTAGATGAAGCACTGGAA
GATTATAAATCAGTATTAGAAAAAGATCCATCAGTACATCAAGCAAGAGAAGCTTGTATGAGATTACCTA
AGCAAATTGAAGAACGTAATGAAAGGTTAAAAGAGGAGATGTTAGGTAAACTAAAAGATCTTGGCAACTT
GGTTCTGCGACCTTTTGGGCTCTCCACAGAAAATTTCCAGATCAAGCAGGATTCTTCTACTGGCTCCTAC
TCCATCAATTTTGTTCAAAATCCGAATAATAATAGATAA

Translation (292 aa):
MEEKSEDCKVPEDLFNGLKVADPQEGESASPMVSDPKGQHCQSKLPKAAEAHPQDDHVEEECFHDCSASF
EEEQPGAHVAGSKASDDSSSELDEEYLIELEKNMPEEEKQKRREESAKLKEEGNERFKRGDYMEAESSYS
QALQMCPACFQKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALE
DYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSY
SINFVQNPNNNR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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