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Report for CCDS16439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16439.1 Public Mus musculus 2 Chrm4 23 108 98 CCDS HistoryNCBI Gene:12672Re-query CCDS DB by CCDS ID:16439.1Re-query CCDS DB by GeneID:12672See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045537.3 ENSMUSP00000040808.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045537.3Link to Ensembl Protein Viewer:ENSMUSP00000040808.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045537Re-query CCDS DB by Protein ID:ENSMUSP00000040808
Original member NCBI NM_007699.2 NP_031725.1 Updated not alive Link to Nucleotide Sequence:NM_007699.2Link to Protein Sequence:NP_031725.1Re-query CCDS DB by Nucleotide ID:NM_007699Re-query CCDS DB by Protein ID:NP_031725
Current member NCBI NM_007699.3 NP_031725.1 Accepted alive Link to Nucleotide Sequence:NM_007699.3Link to Protein Sequence:NP_031725.1Re-query CCDS DB by Nucleotide ID:NM_007699Re-query CCDS DB by Protein ID:NP_031725Link to BLAST:NP_031725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031725.1 479 P32211 479 100% 0 0

Chromosomal Locations for CCDS 16439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91927249 91928688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGCGAACTTCACACCTGTCAATGGCAGCTCAGCCAATCAGTCTGTGCGCCTGGTCACAACAGCCCACA
ACCACCTGGAGACAGTGGAGATGGTGTTCATTGCGACAGTGACTGGTTCCCTGAGCCTGGTGACTGTGGT
GGGTAACATCCTGGTGATGCTGTCCATCAAGGTCAACAGGCAGTTGCAGACAGTCAACAACTACTTCCTG
TTCAGCCTGGCGTGTGCAGATCTCATCATAGGGGCGTTCTCTATGAACCTTTACACCTTATACATCATCA
AGGGCTACTGGCCCCTGGGTGCCGTGGTCTGTGACCTGTGGCTGGCCCTGGACTATGTGGTGAGCAATGC
CTCTGTCATGAACCTTCTCATCATCAGCTTTGACCGCTATTTCTGCGTCACCAAGCCCCTCACCTATCCA
GCCCGCCGCACTACTAAGATGGCAGGCCTCATGATTGCAGCCGCCTGGGTCTTGTCCTTTGTACTCTGGG
CCCCTGCCATCTTGTTCTGGCAGTTTGTGGTGGGCAAGAGGACAGTGCCTGATAACCAGTGCTTCATCCA
GTTCTTGTCCAACCCGGCGGTGACCTTCGGCACAGCCATTGCTGCCTTCTACCTGCCTGTGGTCATCATG
ACGGTGCTGTATATTCATATCTCGCTGGCCAGCCGCAGCCGTGTTCACAAGCATCGACCCGAGGGCCCCA
AGGAGAAGAAGGCCAAGACTCTGGCTTTCCTCAAGAGCCCTCTGATGAAGCCGAGCATTAAGAAACCTCC
ACCAGGGGGCGCTTCTCGAGAGGAACTGCGCAACGGGAAGCTAGAAGAGGCTCCTCCGCCAGCCCTGCCC
CCGCCTCCACGCCCAGTGGCTGACAAGGACACTTCCAATGAGTCCAGCTCAGGCAGTGCCACCCAGAACA
CCAAGGAACGGCCACCCACAGAGCTGTCCACCACAGAGGCCGCCACCACACCAGCGCTGCCCGCTCCTAC
CCTGCAGCCACGAACCCTCAACCCAGCCTCCAAGTGGTCCAAGATCCAAATTGTGACAAAGCAGACAGGC
AGTGAATGTGTGACTGCCATCGAGATCGTACCTGCCACGCCAGCTGGTATGCGCCCAGCAGCCAATGTGG
CCCGAAAGTTTGCCAGCATCGCTCGTAACCAGGTGCGCAAGAAGCGGCAGATGGCGGCCCGGGAGCGCAA
AGTGACTCGGACAATCTTTGCCATTCTGCTGGCCTTCATCCTCACCTGGACACCCTACAATGTCATGGTC
CTGGTGAACACCTTTTGCCAGAGCTGTATCCCCGAAAGGGTGTGGTCCATCGGCTACTGGCTCTGCTACG
TCAACAGCACGATCAACCCTGCCTGCTATGCACTCTGCAATGCCACTTTCAAAAAGACCTTCCGGCACCT
TTTGCTGTGCCAGTATCGGAACATCGGCACAGCCAGGTAG

Translation (479 aa):
MANFTPVNGSSANQSVRLVTTAHNHLETVEMVFIATVTGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFL
FSLACADLIIGAFSMNLYTLYIIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYP
ARRTTKMAGLMIAAAWVLSFVLWAPAILFWQFVVGKRTVPDNQCFIQFLSNPAVTFGTAIAAFYLPVVIM
TVLYIHISLASRSRVHKHRPEGPKEKKAKTLAFLKSPLMKPSIKKPPPGGASREELRNGKLEEAPPPALP
PPPRPVADKDTSNESSSGSATQNTKERPPTELSTTEAATTPALPAPTLQPRTLNPASKWSKIQIVTKQTG
SECVTAIEIVPATPAGMRPAANVARKFASIARNQVRKKRQMAARERKVTRTIFAILLAFILTWTPYNVMV
LVNTFCQSCIPERVWSIGYWLCYVNSTINPACYALCNATFKKTFRHLLLCQYRNIGTAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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