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Report for CCDS25381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25381.1 Public Mus musculus 11 Krt20 23 108 98 CCDS HistoryNCBI Gene:66809Re-query CCDS DB by CCDS ID:25381.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017743.2 ENSMUSP00000017743.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017743.2Link to Ensembl Protein Viewer:ENSMUSP00000017743.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017743Re-query CCDS DB by Protein ID:ENSMUSP00000017743
Original member Current member NCBI NM_023256.2 NP_075745.1 Accepted alive Link to Nucleotide Sequence:NM_023256.2Link to Protein Sequence:NP_075745.1Re-query CCDS DB by Nucleotide ID:NM_023256Re-query CCDS DB by Protein ID:NP_075745Link to BLAST:NP_075745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075745.1 431 Q9D312 431 100% 0 0

Chromosomal Locations for CCDS 25381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99428981 99429078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99430037 99430074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99430753 99430973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99431869 99431994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99432182 99432343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99432818 99432974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99435433 99435515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99437687 99438097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGATTTCAGTCGTCAAAGTTTTCACCGAAGTCTGAGTTCCTCCTCACAAGGCCCAGCACTCAGCATGA
GTGGCTCGCTGTATAGGAAGGGGACTGTGCAGCGTCTGGGGGCTGCACCCAGCGTCTATGGTGGGGCTGG
AGGCCATGGCACTCGCATCTCTGTCTCCAAAGCCGTAATGAGCTACGGGGGTGATCTCTCCAACGGATCG
GACCTGTTTGGGGGCAATGGGAAACTGGCAATGCAGAACCTGAACGACAGATTGGCAAACTACCTAGAAA
AAGTGCGCTCCCTGGAGCAATCCAATTCCAGACTTGAAGCCCAGATCAAGCAGTGGTACGAAACCAACGC
GCCGAGCACCATCCGAGACTATAGCTCCTACTACGCACAGATTAAAGAGCTGCAAAATCAGGTTAAGGAT
GCTCAAGTACAAAATGCCCAGTGCGTCCTGCGAATTGACAATGCTAAGCTGGCTGCAGAGGACTTCAGAT
TGAAGTTTGAGACTGAGAGGGGAATGCGTATAGCTGTGGAAGCTGATCTCCAAGGCCTGAGCAAAGTTTA
TGATAATCTGACTCTTCAAAAGACAGACTTGGAAATTCAGATTGAAGAACTGAACAAGGACCTGGCCCTC
CTCAAAAAGGAACATCAAGAGGAAGTTGAGGTTCTTCGCCGGCAGCTGGGCAACAATGTCAACGTGGAGG
TGGATGCTGCTCCAGGCCTGAACCTGGGAGAGATCATGAATGAGATGAGACAGAGATATGAAGTCCTGGC
CCAGAAGAACCTGCAAGAGGCCAAAGAACAGTTCGAGAGACAGAGTCAAACTCTGCAGCAACAAGTCACA
GTGAACACGGAGGAGCTGAAAGGATTCGAGGTTCAAGTCACGGAGCTGAGACGCACCTACCAGAACCTGG
AGATAGAGTTGCAGTCCCACCTCAGCATGAAAGAGTCTCTGGAGCGCAACCTAGAGGACGTCAAGGCTCG
TTACGCCAGCCAGTTGGCAGCCATCCAGGAGATGCTGAGCTCCCTGGAGGCCCAACTGATGCAGATCAGG
AGTGACACAGAACGCCAGAACCAAGAACACAACATCCTTCTCGACATAAAGACCCGGCTTGAGCAGGAGA
TCGCCACCTACCGCCGCCTTCTGGAGGGAGAAGATATAAAAACTACAGAATACCAGCTGAGCACTTTGGA
AATGAAGGATATCAAGAAAACCAGGAAGATTAAGACGGTCGTGGAAGAAGTGGTAGACGGCAAGGTCGTG
TCCTCTGAAGTCAAGGAGATAGAAGAGAGTGTCTAA

Translation (431 aa):
MDFSRQSFHRSLSSSSQGPALSMSGSLYRKGTVQRLGAAPSVYGGAGGHGTRISVSKAVMSYGGDLSNGS
DLFGGNGKLAMQNLNDRLANYLEKVRSLEQSNSRLEAQIKQWYETNAPSTIRDYSSYYAQIKELQNQVKD
AQVQNAQCVLRIDNAKLAAEDFRLKFETERGMRIAVEADLQGLSKVYDNLTLQKTDLEIQIEELNKDLAL
LKKEHQEEVEVLRRQLGNNVNVEVDAAPGLNLGEIMNEMRQRYEVLAQKNLQEAKEQFERQSQTLQQQVT
VNTEELKGFEVQVTELRRTYQNLEIELQSHLSMKESLERNLEDVKARYASQLAAIQEMLSSLEAQLMQIR
SDTERQNQEHNILLDIKTRLEQEIATYRRLLEGEDIKTTEYQLSTLEMKDIKKTRKIKTVVEEVVDGKVV
SSEVKEIEESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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