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Report for CCDS20406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20406.1 Public Mus musculus 6 Cav3 23 108 98 CCDS HistoryNCBI Gene:12391Re-query CCDS DB by CCDS ID:20406.1Re-query CCDS DB by GeneID:12391See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075477.7 ENSMUSP00000074922.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075477.7Link to Ensembl Protein Viewer:ENSMUSP00000074922.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075477Re-query CCDS DB by Protein ID:ENSMUSP00000074922
Original member Current member NCBI NM_007617.3 NP_031643.1 Accepted alive Link to Nucleotide Sequence:NM_007617.3Link to Protein Sequence:NP_031643.1Re-query CCDS DB by Nucleotide ID:NM_007617Re-query CCDS DB by Protein ID:NP_031643Link to BLAST:NP_031643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031643.1 151 P51637 151 100% 0 0

Chromosomal Locations for CCDS 20406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112459812 112459925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112472137 112472478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGATGACCGAAGAGCACACGGATCTGGAAGCTCGGATCATCAAGGACATTCACTGCAAGGAGATAGACT
TGGTGAACCGCGACCCCAAGAACATCAATGAGGACATTGTGAAGGTAGATTTTGAAGACGTGATTGCGGA
GCCCGAGGGCACCTACAGCTTCGACGGTGTATGGAAGGTGAGCTTCACCACGTTCACCGTCTCCAAGTAC
TGGTGCTACCGCCTGTTGTCTACACTGCTGGGTGTTCCACTGGCCCTGCTCTGGGGATTCCTGTTCGCCT
GTATCTCCTTCTGCCACATCTGGGCCGTGGTGCCCTGCATTAAGAGCTACCTGATCGAGATCCAGTGCAT
CAGCCACATCTACTCACTGTGTATCCGCACCTTCTGCAACCCGCTCTTCGCTGCGTTGGGCCAGGTCTGC
AGCAACATTAAGGTGGTGCTGCGAAGGGAAGGCTAA

Translation (151 aa):
MMTEEHTDLEARIIKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWKVSFTTFTVSKY
WCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVC
SNIKVVLRREG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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