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Report for CCDS26881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26881.1 Public Mus musculus 14 Arf4 23 108 98 CCDS HistoryNCBI Gene:11843Re-query CCDS DB by CCDS ID:26881.1Re-query CCDS DB by GeneID:11843See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022429.8 ENSMUSP00000022429.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022429.8Link to Ensembl Protein Viewer:ENSMUSP00000022429.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022429Re-query CCDS DB by Protein ID:ENSMUSP00000022429
Original member Current member NCBI NM_007479.4 NP_031505.1 Accepted alive Link to Nucleotide Sequence:NM_007479.4Link to Protein Sequence:NP_031505.1Re-query CCDS DB by Nucleotide ID:NM_007479Re-query CCDS DB by Protein ID:NP_031505Link to BLAST:NP_031505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031505.1 180 P61750 180 100% 0 0

Chromosomal Locations for CCDS 26881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 26638420 26638486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26646659 26646739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26646914 26647023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26653106 26653177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26653837 26653962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26655896 26655982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGGCCTCACCATCTCCTCTCTCTTCTCGCGCCTGTTCGGCAAGAAGCAGATGCGCATTTTGATGGTTG
GATTGGATGCTGCTGGCAAGACGACAATTCTGTATAAACTGAAATTAGGGGAAATAGTCACCACCATTCC
TACCATTGGTTTTAATGTGGAAACAGTAGAATATAAGAACATTTGTTTCACAGTATGGGATGTTGGTGGT
CAAGATAAAATTAGGCCTCTCTGGAGGCATTACTTCCAGAATACCCAGGGTCTCATTTTTGTGGTAGATA
GCAATGATCGTGAAAGAATCCAGGAAGGAGCAGCTGTGCTGCAGAAAATGCTTCTGGAAGATGAGCTGCA
GGATGCAGTGCTGCTCCTTTTTGCAAACAAACAGGATCTGCCAAACGCTATGGCCATCAGTGAGATGACA
GACAAGCTAGGTCTGCAGTCTCTCCGAAACAGAACATGGTATGTCCAAGCCACTTGTGCTACACAAGGAA
CTGGTCTGTATGAGGGACTGGATTGGCTGTCAAATGAACTTTCAAAACGTTAA

Translation (180 aa):
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGG
QDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMT
DKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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