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Report for CCDS21212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21212.1 Public Mus musculus 7 Napsa 23 108 98 CCDS HistoryNCBI Gene:16541Re-query CCDS DB by CCDS ID:21212.1Re-query CCDS DB by GeneID:16541See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002274.9 ENSMUSP00000002274.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002274.9Link to Ensembl Protein Viewer:ENSMUSP00000002274.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002274Re-query CCDS DB by Protein ID:ENSMUSP00000002274
Original member Current member NCBI NM_008437.1 NP_032463.1 Accepted alive Link to Nucleotide Sequence:NM_008437.1Link to Protein Sequence:NP_032463.1Re-query CCDS DB by Nucleotide ID:NM_008437Re-query CCDS DB by Protein ID:NP_032463Link to BLAST:NP_032463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032463.1 419 O09043 419 100% 0 0

Chromosomal Locations for CCDS 21212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44572616 44572689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44581204 44581339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44581421 44581544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44581683 44581801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44582342 44582541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44584999 44585121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44585219 44585363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44585714 44585812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44586559 44586798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGTCGCCACTACTGCTGCTGCTGCTGTGCCTGCTGCTGGGGAATTTGGAGCCTGAGGAGGCCAAACTGA
TCCGTGTCCCTCTTCAACGAATCCACCTTGGACACAGAATCTTAAACCCACTGAATGGATGGGAACAGCT
GGCAGAGCTTTCTAGGACCTCCACCTCTGGTGGCAACCCCTCCTTTGTGCCTCTCTCCAAGTTCATGAAC
ACCCAGTATTTTGGAACTATTGGTTTGGGAACGCCTCCTCAGAATTTCACCGTTGTCTTTGACACGGGTT
CTTCCAACTTGTGGGTTCCGTCCACGAGATGTCATTTCTTCAGTTTGGCATGCTGGTTTCACCATCGCTT
TAATCCCAAGGCCTCCAGCTCCTTCAGGCCCAATGGGACCAAGTTTGCCATTCAGTATGGGACCGGGCGG
CTGAGCGGAATCCTGAGCCAGGACAATCTGACTATCGGGGGGATCCACGATGCTTTTGTGACATTTGGAG
AGGCTCTGTGGGAGCCCAGCCTGATCTTTGCTTTAGCCCACTTTGATGGGATCCTGGGCCTCGGCTTCCC
CACTCTGGCTGTGGGCGGAGTTCAGCCTCCGCTGGATGCGATGGTGGAGCAAGGGCTGCTGGAGAAACCC
GTCTTCTCCTTTTACCTCAACAGGGATTCTGAAGGGTCTGATGGGGGAGAGCTGGTCCTAGGGGGCTCAG
ACCCCGCTCACTACGTACCTCCCCTCACCTTCATACCAGTCACCATCCCTGCCTACTGGCAGGTCCACAT
GGAGAGTGTGAAGGTCGGCACAGGGCTGAGCCTCTGTGCCCAGGGCTGCAGTGCCATCCTAGACACAGGC
ACATCCCTCATCACAGGACCTAGTGAGGAGATCCGGGCCTTGAATAAAGCCATTGGGGGATATCCCTTCC
TGAATGGGCAGTACTTCATTCAGTGTTCCAAGACGCCAACGCTTCCCCCTGTCTCCTTCCACCTTGGTGG
AGTCTGGTTTAACCTCACAGGCCAGGACTATGTCATCAAGATTCTTCAGAGCGATGTTGGCCTCTGCCTG
TTGGGCTTCCAAGCCTTGGATATCCCCAAGCCTGCGGGACCCCTCTGGATCCTTGGGGACGTCTTTTTGG
GGCCCTATGTGGCTGTCTTTGACCGTGGGGACAAAAACGTCGGCCCGCGCGTGGGACTGGCGCGTGCTCA
GTCTCGTTCAACAGACCGGGCAGAAAGAAGGACTACGCAGGCGCAGTTCTTCAAAAGACGCCCTGGTTAG

Translation (419 aa):
MSPLLLLLLCLLLGNLEPEEAKLIRVPLQRIHLGHRILNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMN
TQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGR
LSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILGLGFPTLAVGGVQPPLDAMVEQGLLEKP
VFSFYLNRDSEGSDGGELVLGGSDPAHYVPPLTFIPVTIPAYWQVHMESVKVGTGLSLCAQGCSAILDTG
TSLITGPSEEIRALNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCL
LGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVGPRVGLARAQSRSTDRAERRTTQAQFFKRRPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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