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Report for CCDS27301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27301.1 Public Mus musculus 14 Elf1 23 108 98 CCDS HistoryNCBI Gene:13709Re-query CCDS DB by CCDS ID:27301.1Re-query CCDS DB by GeneID:13709See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040131.12 ENSMUSP00000046515.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040131.12Link to Ensembl Protein Viewer:ENSMUSP00000046515.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040131Re-query CCDS DB by Protein ID:ENSMUSP00000046515
Original member Current member EBI ENSMUST00000110835.2 ENSMUSP00000106459.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110835.2Link to Ensembl Protein Viewer:ENSMUSP00000106459.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110835Re-query CCDS DB by Protein ID:ENSMUSP00000106459
Original member NCBI NM_001286411.1 NP_001273340.1 Updated not alive Link to Nucleotide Sequence:NM_001286411.1Link to Protein Sequence:NP_001273340.1Re-query CCDS DB by Nucleotide ID:NM_001286411Re-query CCDS DB by Protein ID:NP_001273340
Current member NCBI NM_001286411.2 NP_001273340.1 Accepted alive Link to Nucleotide Sequence:NM_001286411.2Link to Protein Sequence:NP_001273340.1Re-query CCDS DB by Nucleotide ID:NM_001286411Re-query CCDS DB by Protein ID:NP_001273340Link to BLAST:NP_001273340.1
Original member NCBI NM_007920.4 NP_031946.1 Updated not alive Link to Nucleotide Sequence:NM_007920.4Link to Protein Sequence:NP_031946.1Re-query CCDS DB by Nucleotide ID:NM_007920Re-query CCDS DB by Protein ID:NP_031946
Current member NCBI NM_007920.5 NP_031946.1 Accepted alive Link to Nucleotide Sequence:NM_007920.5Link to Protein Sequence:NP_031946.1Re-query CCDS DB by Nucleotide ID:NM_007920Re-query CCDS DB by Protein ID:NP_031946Link to BLAST:NP_031946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273340.1 612 Q60775 612 100% 0 0
NP_031946.1 612 Q60775 612 100% 0 0

Chromosomal Locations for CCDS 27301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 79536351 79536422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79560747 79560927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79565462 79565572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79567150 79567314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79569221 79569304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79570723 79570915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79573172 79573618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79580185 79580770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCTGCTGTTGTCCAACAGAACGACCTAGTGTTTGAATTTGCAAGTAACGGCATGGAGGACGAGCAGC
AGCTTGGTGATCCTGCTATATTTCCTGCTGTTATTGTGGAACATGTTCCTGGTGCTGATATTCTCAATAG
TTATGCTGGTCTAGCTTGTGTGGAAGAGCCTAATGACATGATTACTGAGAGCTCATTGGATGTTGCTGAA
GAAGAAATCATAGACGATGACGATGACGACATCACCCTTACAGTTGAGGCTTCTTGTCATAATGGAGATG
AAACAATTGAGACCATTGAGGCTGCCGAGGCACTCCTCAATATAGATTCTCCCAGCCCTCCTGTACTGGA
TGAAAAGCAAATCAATAATAATATATTTAGCTCCTCTGAAGATGACATCGTTGCCCCAATCACCCATGTG
TCCGTCACATTAGATGGGATTCCTGAAGTGATGGAAACTCAGCAAGTGCAAGAGACAAATGCAGACTCCC
CAGGAGCCTCCTCCCCAGAGCAGCGCAAGAGAAAGAAAGGAAGGAAAACAAAACCACCACGGCCAGATTC
CCCGACGACTACACCAAATATCTCTGTGAAAAAGAAAAATAAAGATGGGAAGGGAAACACAATTTACCTT
TGGGAGTTTTTGCTGGCCCTGCTTCAGGACAAAGCTACCTGTCCTAAGTACATCAAGTGGACGCAGCGAG
AAAAGGGCATTTTTAAGCTGGTTGATTCTAAAGCCGTGTCTAGATTGTGGGGGAAGCACAAAAACAAACC
TGACATGAACTACGAGACCATGGGGAGAGCACTCAGGTACTATTACCAAAGAGGTATTCTTGCAAAAGTG
GAAGGTCAGCGCTTGGTGTATCAGTTTAAAGAAATGCCAAAAGATCTTATCTACATAGATGATGAGGATC
CAAGTTCCAGCATAGAGTCTTCGGATCAGTCCTTATCGTCAACAACCGCATCAAGTCGGAATCAAGCAAA
CCGATCAAGAGTATCTTCAAGTCCAGGAATTAAAGGAGGGGCCGCTACAATTCTAAAGCCCGGGAATTCT
AAAGCTGCAAACCCCAAAGATCCGGTGGAAGTTGGACAACCTTCAGAAGTTCTGAGGACAGTGCAACCCT
CACAGGCTCCCTATCCTACCCAGCTCTTCCGAACTGTTCATGTAGTACAGCCAGTACAAGCTGTCCCAGA
GGAAGCAACCATAGCCAGCACCATGCAGGAGGAAGCAGCAAATTCTTCAGTTCCAAGTATTAGGACTATA
CAGGCTTCAACCCAGGTTCCAGTAGTGGTGTCTCCTGGCAACCAACAGTTACATACAGTAACAGTGCCAC
TCACAACGGTTATAGCCAGCATAGACCCATCATCAGGTGCTGGGTCTCAGAAATTCATTTTACAAACCAT
TCCATCGTCACAGCCCATGACAGTACTGAAAGAAAATGTCATGCTACAGTCACAGAAGCCAGGCTCTCCT
TCAATTGTCCTCAGCCCCACCCAAGTACAGCAGGTCCTCACAAGCAATGTTCAGTCCATTTGCAATGGAG
CGGGCAGTGTGGCATCCGCACCATCGTTCAGCGCGACGACACCTGTGGTGACTTTCTCTCGGAGTTCACA
GCTGGTCGCACACCCACCGGGCACTGTGATCACTTCTGTTATCAAAGCTCAGGAAACAAAAACTCTTAAG
CAAGAGGTGGAGAAAAAGGCCGAAGATGATTTGAATGAAGATGCTGAGAAAAGTGCCCAGCAGCCCCAGC
CTTATGTGATGGTGTTATCCAGTTCAAACGGGTTTTCCTCTCAGGTAGCCGTCAAACAGAATGAACTGCT
AGAGCCCAACTCTTTTTAA

Translation (612 aa):
MAAVVQQNDLVFEFASNGMEDEQQLGDPAIFPAVIVEHVPGADILNSYAGLACVEEPNDMITESSLDVAE
EEIIDDDDDDITLTVEASCHNGDETIETIEAAEALLNIDSPSPPVLDEKQINNNIFSSSEDDIVAPITHV
SVTLDGIPEVMETQQVQETNADSPGASSPEQRKRKKGRKTKPPRPDSPTTTPNISVKKKNKDGKGNTIYL
WEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKV
EGQRLVYQFKEMPKDLIYIDDEDPSSSIESSDQSLSSTTASSRNQANRSRVSSSPGIKGGAATILKPGNS
KAANPKDPVEVGQPSEVLRTVQPSQAPYPTQLFRTVHVVQPVQAVPEEATIASTMQEEAANSSVPSIRTI
QASTQVPVVVSPGNQQLHTVTVPLTTVIASIDPSSGAGSQKFILQTIPSSQPMTVLKENVMLQSQKPGSP
SIVLSPTQVQQVLTSNVQSICNGAGSVASAPSFSATTPVVTFSRSSQLVAHPPGTVITSVIKAQETKTLK
QEVEKKAEDDLNEDAEKSAQQPQPYVMVLSSSNGFSSQVAVKQNELLEPNSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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