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Report for CCDS18704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18704.1 Public Mus musculus 4 Ptp4a2 23 108 98 CCDS HistoryNCBI Gene:19244Re-query CCDS DB by CCDS ID:18704.1Re-query CCDS DB by GeneID:19244See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030578.13 ENSMUSP00000030578.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030578.13Link to Ensembl Protein Viewer:ENSMUSP00000030578.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030578Re-query CCDS DB by Protein ID:ENSMUSP00000030578
Original member Current member EBI ENSMUST00000165853.1 ENSMUSP00000125901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165853.1Link to Ensembl Protein Viewer:ENSMUSP00000125901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165853Re-query CCDS DB by Protein ID:ENSMUSP00000125901
Original member NCBI NM_001164745.1 NP_001158217.1 Updated not alive Link to Nucleotide Sequence:NM_001164745.1Link to Protein Sequence:NP_001158217.1Re-query CCDS DB by Nucleotide ID:NM_001164745Re-query CCDS DB by Protein ID:NP_001158217
Current member NCBI NM_001164745.2 NP_001158217.1 Accepted alive Link to Nucleotide Sequence:NM_001164745.2Link to Protein Sequence:NP_001158217.1Re-query CCDS DB by Nucleotide ID:NM_001164745Re-query CCDS DB by Protein ID:NP_001158217Link to BLAST:NP_001158217.1
Original member NCBI NM_008974.4 NP_033000.1 Updated not alive Link to Nucleotide Sequence:NM_008974.4Link to Protein Sequence:NP_033000.1Re-query CCDS DB by Nucleotide ID:NM_008974Re-query CCDS DB by Protein ID:NP_033000
Current member NCBI NM_008974.5 NP_033000.1 Accepted alive Link to Nucleotide Sequence:NM_008974.5Link to Protein Sequence:NP_033000.1Re-query CCDS DB by Nucleotide ID:NM_008974Re-query CCDS DB by Protein ID:NP_033000Link to BLAST:NP_033000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158217.1 167 O70274 167 100% 0 0
NP_033000.1 167 O70274 167 100% 0 0

Chromosomal Locations for CCDS 18704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129839583 129839678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129842670 129842762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129845062 129845192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129846465 129846539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129847714 129847822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGAACCGTCCAGCCCCTGTGGAGATCTCTTATGAGAACATGCGTTTTCTGATAACTCACAACCCCACCA
ATGCGACTCTCAACAAGTTCACAGAGGAACTTAAGAAGTACGGAGTGACAACTTTGGTTCGAGTTTGTGA
TGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCGTTTGATGATGGA
GCTCCACCCCCTAATCAGATAGTAGATGATTGGCTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAG
GCTGTTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAGGGCTCCTGTGCTAGTTGCGCTTGCATTGAT
TGAATGCGGAATGAAGTATGAAGATGCTGTTCAATTTATAAGACAAAAAAGAAGAGGAGCATTCAATTCC
AAACAGCTGCTTTACTTGGAGAAGTACCGACCTAAGATGCGGTTACGCTTCAGAGATACCAATGGGCACT
GCTGTGTTCAGTAG

Translation (167 aa):
MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDG
APPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNS
KQLLYLEKYRPKMRLRFRDTNGHCCVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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