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Report for CCDS28690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28690.1 Public Mus musculus 17 Ltb 23 108 98 CCDS HistoryNCBI Gene:16994Re-query CCDS DB by CCDS ID:28690.1Re-query CCDS DB by GeneID:16994See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28690.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025262.5 ENSMUSP00000025262.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025262.5Link to Ensembl Protein Viewer:ENSMUSP00000025262.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025262Re-query CCDS DB by Protein ID:ENSMUSP00000025262
Original member Current member NCBI NM_008518.2 NP_032544.1 Accepted alive Link to Nucleotide Sequence:NM_008518.2Link to Protein Sequence:NP_032544.1Re-query CCDS DB by Nucleotide ID:NM_008518Re-query CCDS DB by Protein ID:NP_032544Link to BLAST:NP_032544.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032544.1 306 P41155 306 100% 0 0

Chromosomal Locations for CCDS 28690.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35194522 35194683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35195050 35195365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35195704 35196146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGGGACACGGGGACTGCAGGGCCTGGGTGGGAGACCCCAGGGGAGGGGCTGCCTCTTGCTGGCTGTGG
CAGGAGCTACTTCCCTGGTGACCCTGTTGTTGGCAGTGCCTATCACTGTCCTGGCTGTGCTGGCCTTGGT
GCCGCAGGATCAGGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGAT
GACAGCAAACCGTCGTGCATCTTGCCCTCACCCTCTAGCCTCTCAGAGACTCCTGACCCCCGTCTGCATC
CTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGA
GGCATCTGCATGGATGACCATCCTGTCTCCAGCTGCGGATTCTACACCAGATCCAGGGGTTCAACAGCTG
CCAAAGGGGGAACCAGAAACTGACCTCAACCCTGAGCTCCCTGCTGCCCACCTCATAGGCGCTTGGATGA
GTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAGCGGCGCGCAGTTCTCCCC
CACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATTACCTCTACTGCCACGTCGGGTACAGGGGCAGG
ACGCCCCCTGCCGGCCGAAGCCGTGCTCGCTCGCTCACGCTGCGCAGCGCCCTGTACCGCGCGGGGGGCG
CCTACGGGCGAGGTTCCCCCGAGTTGCTGCTGGAGGGCGCGGAGACAGTCACACCTGTTGTGGACCCCAT
CGGGTACGGGTCGTTATGGTACACGAGCGTGGGGTTCGGCGGCCTGGCGCAGCTCCGGAGCGGCGAGAGG
GTCTACGTTAACATCAGTCACCCCGACATGGTGGACTACAGGAGAGGGAAGACCTTCTTCGGGGCGGTGA
TGGTGGGGTGA

Translation (306 aa):
MGTRGLQGLGGRPQGRGCLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGRRVEKIIGSGAQAQKRLD
DSKPSCILPSPSSLSETPDPRLHPQRSNASRNLASTSQGPVAQSSREASAWMTILSPAADSTPDPGVQQL
PKGEPETDLNPELPAAHLIGAWMSGQGLSWEASQEEAFLRSGAQFSPTHGLALPQDGVYYLYCHVGYRGR
TPPAGRSRARSLTLRSALYRAGGAYGRGSPELLLEGAETVTPVVDPIGYGSLWYTSVGFGGLAQLRSGER
VYVNISHPDMVDYRRGKTFFGAVMVG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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