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Report for CCDS27307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27307.1 Public Mus musculus 14 Ccdc202 23 108 98 CCDS HistoryNCBI Gene:66732Re-query CCDS DB by CCDS ID:27307.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27307.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045892.2 ENSMUSP00000044028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045892.2Link to Ensembl Protein Viewer:ENSMUSP00000044028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000045892Re-query CCDS DB by Protein ID:ENSMUSP00000044028
Original member Current member EBI ENSMUST00000228913.1 ENSMUSP00000153934.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228913.1Link to Ensembl Protein Viewer:ENSMUSP00000153934.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228913Re-query CCDS DB by Protein ID:ENSMUSP00000153934
Original member Current member NCBI NM_001358241.1 NP_001345170.1 Accepted alive Link to Nucleotide Sequence:NM_001358241.1Link to Protein Sequence:NP_001345170.1Re-query CCDS DB by Nucleotide ID:NM_001358241Re-query CCDS DB by Protein ID:NP_001345170Link to BLAST:NP_001345170.1
Original member Current member NCBI NM_025733.3 NP_080009.1 Accepted alive Link to Nucleotide Sequence:NM_025733.3Link to Protein Sequence:NP_080009.1Re-query CCDS DB by Nucleotide ID:NM_025733Re-query CCDS DB by Protein ID:NP_080009Link to BLAST:NP_080009.1

Chromosomal Locations for CCDS 27307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 95881809 95882633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGATGTCTCTGGATCAAAACAAATACACAAAAGGAAAATACTGCAGTTGTTTTCTTGTTTCTCTTGTA
CCCGAAATCAGAAGAAACTCAAACATAAATCCCACGAAGTAGAAAAAAAACTCTGTAGAGAAAATAAGGC
GTTGAGAGATGAAAACAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGAAAACAAAGCCTTAGGA
CGAGAGAATAAAACCTTTCGGATGGACAACCAGTTCATCAGGGAGAGGAACCGCATCCTACGGCAGCAGA
ACCAGCTACTCCGGAAGGTGAAAAGGTTGATGTCAGAGAACCCAAAACTGTCGGGGGAAGAATACAACGC
CTTGAGCACAGAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGG
CAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGGAGA
CCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGATGAGGGATGGAGTGGC
GGCGGAGCTGGCCGAGGCCCTGACCAAGGAGGGGGCTGCTCTGGAGATGGAAGAACAGGCTCTGTGGAAG
GAGGAGCAGGCTCTCCGGGAGGAGAACAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGATGAAGAAG
TTGCCCTGCAGGAAGAGGCGAAAATCCTCCAGGAGTGGAATAATCTTCTTCAGGGGAAGATCACAAACAA
CCTCCCAGGGAAAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCAAGAATGTAA

Translation (274 aa):
MDVSGSKQIHKRKILQLFSCFSCTRNQKKLKHKSHEVEKKLCRENKALRDENRALRKDNKFLWGENKALG
RENKTFRMDNQFIRERNRILRQQNQLLRKVKRLMSENPKLSGEEYNALSTEGKSFWQQNRAMEAQITALR
QQEKAFQNEAKALHEEIKSLCEETKALQHQERALRMEEKALMRDGVAAELAEALTKEGAALEMEEQALWK
EEQALREENKALREEHGALQDEEVALQEEAKILQEWNNLLQGKITNNLPGKTQNQDPKKCGPRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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