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Report for CCDS52096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52096.1 Public Mus musculus 7 Vmn1r128 23 108 98 CCDS HistoryNCBI Gene:667199Re-query CCDS DB by CCDS ID:52096.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169165.1 ENSMUSP00000129433.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169165.1Link to Ensembl Protein Viewer:ENSMUSP00000129433.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169165Re-query CCDS DB by Protein ID:ENSMUSP00000129433
Original member Current member NCBI NM_001166739.1 NP_001160211.1 Accepted alive Link to Nucleotide Sequence:NM_001166739.1Link to Protein Sequence:NP_001160211.1Re-query CCDS DB by Nucleotide ID:NM_001166739Re-query CCDS DB by Protein ID:NP_001160211Link to BLAST:NP_001160211.1

Chromosomal Locations for CCDS 52096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 21349373 21350296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTGCTCATGGTAAATCTGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCAGT
TTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAA
AAAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATA
TTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATTCT
TCAGTCACATGGTGGCAAGAAGCAAAAATTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC
TCTAGTTCCTGTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTGTGGAATTAT
TCCTGCTACAGTTGTTGGTTTTACAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCAC
AGATAACAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCAT
GGTCTTCTTGCAGTTTTCCCATGATGCCACATTCATGACCATCATGGTCTGGACCAGTGTCTCCATGGTA
CTTCTCCTCCATAGACATCACCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAG
CTGAGACAAGAGCAACCCATACTATCCTGATGCTGGTGGTCACATTTGTTAGCTTTTATCTTCTAAATTG
TATTTGTATCATCTTTCATGCTTTTTCTATACATTCTCGTCTCTTCATAAGGCTTGTCAGTGAGGTTCTG
GGTGCAGTCTTCCCCAATATCTGCCCCTTACTGTTGATCTTCAGAGATCCTAAAGATCCTTTTTCTGTGC
TCTTCAAATGTTGA

Translation (307 aa):
MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTI
FPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNY
SCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMV
LLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVL
GAVFPNICPLLLIFRDPKDPFSVLFKC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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