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Report for CCDS24353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24353.1 Public Mus musculus 10 Neurod4 23 108 98 CCDS HistoryNCBI Gene:11923Re-query CCDS DB by CCDS ID:24353.1Re-query CCDS DB by GeneID:11923See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061571.4 ENSMUSP00000051379.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061571.4Link to Ensembl Protein Viewer:ENSMUSP00000051379.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061571Re-query CCDS DB by Protein ID:ENSMUSP00000051379
Original member Current member NCBI NM_001329489.1 NP_001316418.1 Accepted alive Link to Nucleotide Sequence:NM_001329489.1Link to Protein Sequence:NP_001316418.1Re-query CCDS DB by Nucleotide ID:NM_001329489Re-query CCDS DB by Protein ID:NP_001316418Link to BLAST:NP_001316418.1
Original member Current member NCBI NM_001329490.1 NP_001316419.1 Accepted alive Link to Nucleotide Sequence:NM_001329490.1Link to Protein Sequence:NP_001316419.1Re-query CCDS DB by Nucleotide ID:NM_001329490Re-query CCDS DB by Protein ID:NP_001316419Link to BLAST:NP_001316419.1
Original member Current member NCBI NM_007501.5 NP_031527.1 Accepted alive Link to Nucleotide Sequence:NM_007501.5Link to Protein Sequence:NP_031527.1Re-query CCDS DB by Nucleotide ID:NM_007501Re-query CCDS DB by Protein ID:NP_031527Link to BLAST:NP_031527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316418.1 330 O09105 330 100% 0 0
NP_001316419.1 330 O09105 330 100% 0 0
NP_031527.1 330 O09105 330 100% 0 0

Chromosomal Locations for CCDS 24353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 130270411 130271403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGCAAAAATGTATATGAAATCCAAGGACATGGTGGAGCTGGTCAACACACAATCCTGGATGGACAAAG
GTCTGAGCTCTCAAAATGAGATGAAGGAGCAAGAGAGAAGACCGGGCTCTTATGGAATGCTCGGAACCTT
AACTGAAGAGCATGACAGTATTGAGGAGGATGAAGAAGAGGAAGAAGATGGAGATAAACCTAAAAGAAGA
GGTCCCAAGAAAAAGAAGATGACTAAAGCTCGCCTTGAAAGATTCAGGGCTCGAAGAGTCAAGGCCAATG
CTAGAGAACGGACCCGGATGCATGGCCTGAATGATGCCTTGGATAATCTTAGGAGAGTCATGCCATGTTA
CTCTAAAACTCAAAAGCTTTCCAAGATAGAGACTCTTCGACTGGCAAGGAACTACATCTGGGCCTTGTCT
GAAGTCCTGGAGACTGGTCAGACACTTGAAGGGAAGGGATTTGTAGAGATGCTATGTAAAGGTCTCTCTC
AACCCACAAGCAACCTGGTTGCTGGATGCCTCCAACTGGGGCCTCAATCTACCCTCCTGGAGAAGCATGA
GGAAAAATCTTCAATTTGTGACTCTACTATCTCTGTCCACAGCTTCAACTATCAGTCTCCAGGGCTCCCC
AGCCCTCCTTATGGCCATATGGAAACACATTCTCTCCATCTCAAGCCTCAACCATTTAAGAGTTTGGGTG
ACTCTTTTGGGAGCCATCCACCTGACTGCAGTACCCCCCCTTATGAGGGTCCACTCACACCACCCCTGAG
CATTAGTGGCAACTTCTCCTTAAAGCAAGACGGCTCCCCTGATTTGGAAAAATCCTACAATTTCATGCCA
CATTATACCTCTGCAAGTCTAAGTTCAGGGCATGTGCATTCAACTCCCTTTCAGACTGGCACTCCCCGCT
ATGATGTTCCTGTAGACCTGAGCTATGATTCCTACTCCCACCATAGCATTGGAACTCAGCTCAATACGAT
CTTCTCTGATTAG

Translation (330 aa):
MAKMYMKSKDMVELVNTQSWMDKGLSSQNEMKEQERRPGSYGMLGTLTEEHDSIEEDEEEEEDGDKPKRR
GPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALS
EVLETGQTLEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSTLLEKHEEKSSICDSTISVHSFNYQSPGLP
SPPYGHMETHSLHLKPQPFKSLGDSFGSHPPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYNFMP
HYTSASLSSGHVHSTPFQTGTPRYDVPVDLSYDSYSHHSIGTQLNTIFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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