NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80620.1 Public Mus musculus 6 Olr1 23 108 98 CCDS HistoryNCBI Gene:108078Re-query CCDS DB by CCDS ID:80620.1Re-query CCDS DB by GeneID:108078See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182784.3 ENSMUSP00000138588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182784.3Link to Ensembl Protein Viewer:ENSMUSP00000138588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182784Re-query CCDS DB by Protein ID:ENSMUSP00000138588
Original member Current member NCBI NM_001301094.1 NP_001288023.1 Accepted alive Link to Nucleotide Sequence:NM_001301094.1Link to Protein Sequence:NP_001288023.1Re-query CCDS DB by Nucleotide ID:NM_001301094Re-query CCDS DB by Protein ID:NP_001288023Link to BLAST:NP_001288023.1

Chromosomal Locations for CCDS 80620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129487666 129487807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129488084 129488199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129488832 129488968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129502079 129502180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129507035 129507107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGACTTTTGATGACAAGATGAAGCCTGCGAATGACGAGCCTGATCAGAAGTCATGTGGCAAGAAGCCTA
AAGGTCTGCATTTGCTTTCTTCCCCATGGTGGTTCCCTGCTGCTATGACTCTGGTCATCCTCTGCCTGGT
GTTGTCAGTGACCCTTATTGTACAGTGGACACAATGTCCTTGTCCACAAGACTGGCTCTGGCATAAAGAA
AACTGTTACCTCTTCCATGGGCCCTTTAGCTGGGAAAAAAACCGGCAGACCTGCCAATCTTTGGGTGGCC
AGTTACTACAAATTAATGGTGCAGATGATCTGACATTCATCTTACAAGCAATTTCCCATACCACCTCCCC
GTTCTGGATTGGATTGCATCGGAAGAAGCCTGGCCAACCATGGCTATGGGAGAATGGAACTCCTTTGAAT
TTTCAATTCTTTAAGACCAGGGGCGTTTCTTTACAGCTATATTCATCAGGCAACTGTGCATACCTTCAAG
ACGGAGCTGTGTTCGCTGAAAACTGCATTCTAATTGCATTCAGCATATGTCAGAAGAAGACAAATCATTT
GCAAATTTAG

Translation (189 aa):
MTFDDKMKPANDEPDQKSCGKKPKGLHLLSSPWWFPAAMTLVILCLVLSVTLIVQWTQCPCPQDWLWHKE
NCYLFHGPFSWEKNRQTCQSLGGQLLQINGADDLTFILQAISHTTSPFWIGLHRKKPGQPWLWENGTPLN
FQFFKTRGVSLQLYSSGNCAYLQDGAVFAENCILIAFSICQKKTNHLQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH