NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24176.1 Public Mus musculus 10 Tbc1d15 23 108 98 CCDS HistoryNCBI Gene:66687Re-query CCDS DB by CCDS ID:24176.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020339.9 ENSMUSP00000020339.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020339.9Link to Ensembl Protein Viewer:ENSMUSP00000020339.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020339Re-query CCDS DB by Protein ID:ENSMUSP00000020339
Original member NCBI NM_025706.3 NP_079982.3 Updated not alive Link to Nucleotide Sequence:NM_025706.3Link to Protein Sequence:NP_079982.3Re-query CCDS DB by Nucleotide ID:NM_025706Re-query CCDS DB by Protein ID:NP_079982
Current member NCBI NM_025706.4 NP_079982.3 Accepted alive Link to Nucleotide Sequence:NM_025706.4Link to Protein Sequence:NP_079982.3Re-query CCDS DB by Nucleotide ID:NM_025706Re-query CCDS DB by Protein ID:NP_079982Link to BLAST:NP_079982.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079982.3 671 Q9CXF4 671 100% 0 0

Chromosomal Locations for CCDS 24176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115199552 115199764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115202504 115202590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115203118 115203234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115208897 115208994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115209557 115209656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115210196 115210296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115212691 115212807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115217562 115217656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115218551 115218654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115219152 115219280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115220211 115220408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115221583 115221685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115229125 115229335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115233120 115233258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115239272 115239346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115240849 115240947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115251382 115251411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGCGGCGGCGGGTGTTGTGAGCGGGAAGATTATATATGAACAAGAAGGAGTATATATTCACTCATCTT
GCGGAAAGGCAAATGACCAAGACAGCTTGATTTCAGGAATATTGCGTGTTTTAGAAAAGGATGCTGAAGT
AATAGTGGACTGGAGACCATTGGATGATGCATTAGATTCTTCCAGTATTCTGTGTGCTGGAAAGGACTCC
AGCTCAGTCGTAGAGTGGACTCAGGCTCCAAAGGAAAGAGCTCATCGGGGGTCGGACCAGCAGAGCAGCT
ATGAAGCGGAGTGGGACATGGTTACTACAGTGTCCTTTAAGAAGAAACCACACACCAATGGAGATGCTCC
AGGCCATAGGAACGGGAAAAGCAAATGGTCGTTCCTGTTCAGCCTGGCAGACCTGAAGTCAGTCAAGCAG
AGCAAGGAGGGCATGGGCTGGTCGTACCTGGTCTTCTGCCTGAAGGATGACGTCATGCTGCCTGCCCTGC
ACTTCCATCAAGGAGACAGCAAACTGCTGATCGAGTCTCTTGAGAAATACGTGGTATTGTGTGAGTCACC
ACAAGATAGTAGAACACTTCTAGTCAATTGTCAGAATAAGAGTCTCTCACAGTCTTTTGAAAATCTTCTT
GATGAACCAGCATATGGCTTAATACAAAAAATTAAAAAGGATCCTTATACAGCAACCATGGTAGGATTTT
CCAAAGTTACAAACTACATTTTTGACAGTTTGCGAGGCAGCGATCCCTCTACACATCAACGACCACCTTC
AGAAATGGCAGATTTTCTTAGTGACGCTATCCCAGGACTCAAGATAAACCAGCAAGAAGAGCCAGGATTT
GAAGTCATCACTAGAATTGATTTGGGAGAGCGACCTGTTGTGCAAAGGCGGGAGCCAGTGTCCCTGGAAG
AATGGAACAAGAGCCTTGACCCTGAAGGAAGACTCGTAGCCGTGGAGAGCATGAAGCAAAAGATATTCAG
AGGGGGTCTTAGTCATTCATTAAGAAAGCAAGCATGGAAATTTCTCCTGGGTTATTTTCCTTGGGATAGT
ACCAAAGAGGAAAGAACTCAGTTACAAAAACAAAAAACTGATGAGTACTTCAGGATGAAACTGCAGTGGA
AGTCTGTCAGTGAGGCTCAGGAGAAGAGAAACTCACGCCTGAGAGACTACAGAAGTCTGATCGAGAAAGA
TGTCAACAGAACAGATCGAACGAACAAGTTTTATGAAGGCCAAGATAACCCAGGGCTGATTCTGCTTCAC
GACATTTTGATGACCTACTGTATGTATGACTTTGATTTAGGATATGTACAAGGAATGAGCGACTTACTTT
CCCCACTTTTGTATGTGATGGAGAATGAAGTGGATGCCTTTTGGTGCTTTGCCTCTTACATGGACCAGAT
GCATCAAAATTTTGAAGAACAAATGCAGGGCATGAAGACGCAGTTAATCCAGTTGAGTACCTTACTCAGG
TTACTGGACAGTGGATTTTGTAGCTATTTAGAATCCCAGGACTCTGGATATCTATATTTTTGCTTCAGAT
GGCTTTTAATCAGATTTAAAAGGGAATTTAGTTTTCTAGATATACTTCGATTATGGGAGGTAATGTGGAC
TGAACTGCCCTGTAAGAATTTTCATCTTCTTCTGTGTTGTGCCATCCTGGAATCAGAAAAGCAACAGATA
ATGGCAAAGCACTATGGCTTCAATGAAATCCTTAAGCACATCAATGAGTTGTCCATGAAGATTGATGTGG
AAGATATACTCTGTAAAGCAGAAGCAATTTCCCTACAGATGGCACAATGCAAGGAATTGCCACAAGCAGT
TTGTGAGATCCTGGGACTTCAGGACAGTGAAATTACAACGCCAGATTCCGACACTGATGAAAATGTTGGC
AGCCCTTGTCCTGTATCTGCGTTTCCAAGTAGCACCTTGCCCATCCTTGCTGCCAGTGAAGCCAAAGATG
ACAGTCCAACACAGACATTAGCATCCCCGAATGCCTGCAGATTAACACCTGCATGA

Translation (671 aa):
MAAAGVVSGKIIYEQEGVYIHSSCGKANDQDSLISGILRVLEKDAEVIVDWRPLDDALDSSSILCAGKDS
SSVVEWTQAPKERAHRGSDQQSSYEAEWDMVTTVSFKKKPHTNGDAPGHRNGKSKWSFLFSLADLKSVKQ
SKEGMGWSYLVFCLKDDVMLPALHFHQGDSKLLIESLEKYVVLCESPQDSRTLLVNCQNKSLSQSFENLL
DEPAYGLIQKIKKDPYTATMVGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGF
EVITRIDLGERPVVQRREPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDS
TKEERTQLQKQKTDEYFRMKLQWKSVSEAQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLH
DILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLR
LLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQI
MAKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDSEITTPDSDTDENVG
SPCPVSAFPSSTLPILAASEAKDDSPTQTLASPNACRLTPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH