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Report for CCDS38892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38892.1 Public Mus musculus 4 Snrnp40 23 108 98 CCDS HistoryNCBI Gene:66585Re-query CCDS DB by CCDS ID:38892.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105994.3 ENSMUSP00000101616.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105994.3Link to Ensembl Protein Viewer:ENSMUSP00000101616.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105994Re-query CCDS DB by Protein ID:ENSMUSP00000101616
Original member Current member NCBI NM_025645.2 NP_079921.2 Accepted alive Link to Nucleotide Sequence:NM_025645.2Link to Protein Sequence:NP_079921.2Re-query CCDS DB by Nucleotide ID:NM_025645Re-query CCDS DB by Protein ID:NP_079921Link to BLAST:NP_079921.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079921.2 358 Q6PE01 358 100% 0 0

Chromosomal Locations for CCDS 38892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130360206 130360349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130362628 130362757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130365075 130365168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130368189 130368354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130378046 130378168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130383394 130383514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130384482 130384564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130385954 130386015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130388575 130388678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130389544 130389593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGATCGAGCAGCAGAAGCGTAAGGGCCCGGAGCTACCCCTGGTTCCCGTCAAGCGGCCGCGACATGAGT
TGCTGTTGGGAGCGGCAGGAGCCGGCCCCGGAGCGGGGCCGCAGCAGGCGACTCCAGGGGCATTGCTGCA
GGCGGGACCGCCCAGGTGTTCTTCCCTTCAAGCTCCAATCATGCTGCTCTCGGGACATGAGGGGGAAGTG
TACTGCTGCAAGTTTCACCCCAATGGATCCACCCTGGCTTCTGCAGGATTTGACCGGCTAATACTGTTGT
GGAACGTCTATGGAGACTGTGATAACTATGCGACGTTGAAGGGACACAGTGGAGCAGTGATGGAGCTGCA
CTATAACACAGATGGCAGCATGCTCTTCTCAGCGTCGACAGACAAAACTGTGGCGGTGTGGGATAGTGAA
ACTGGGGAGAGAGTGAAAAGGCTAAAGGGGCATACTTCCTTTGTGAACTCCTGTTACCCAGCCAGGCGGG
GCCCCCAACTTGTCTGTACTGGCAGTGACGATGGTACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGC
TGTCCAGACATTTCAGAACACGTACCAGGTGTTGGCTGTGACCTTCAATGACACGAGCGATCAGATTATC
TCTGGTGGAATAGATAATGACATCAAGGTCTGGGACCTACGCCAAAACAAGTTAACCTACACCATGAGAG
GCCATGCAGACTCTGTAACTGGCCTGAGCTTGAGTTCTGAAGGCTCTTATCTCCTGTCCAATGCAATGGA
CAACACAGTTCGTGTCTGGGATGTCCGGCCATTTGCTCCCAAAGAGAGATGTGTGAAGATATTTCAAGGA
AATGTCCACAACTTTGAAAAGAACCTCCTGAGATGTTCCTGGTCTCCAGATGGAAGCAAGATAGCAGCTG
GCTCAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCCGAAGGGTCCTGTACAAGCTGCCTGGTCA
CGCTGGCTCCATCAATGAAGTGGCTTTCCACCCCGACGAGCCCATCATCCTCTCAGCATCCAGTGACAAG
AGGCTGTACATGGGTGAGATCCAGTGA

Translation (358 aa):
MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEV
YCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSE
TGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQII
SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQG
NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSDK
RLYMGEIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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