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Report for CCDS25206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25206.1 Public Mus musculus 11 Gdpd1 23 108 98 CCDS HistoryNCBI Gene:66569Re-query CCDS DB by CCDS ID:25206.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020804.7 ENSMUSP00000020804.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020804.7Link to Ensembl Protein Viewer:ENSMUSP00000020804.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020804Re-query CCDS DB by Protein ID:ENSMUSP00000020804
Original member Current member NCBI NM_025638.2 NP_079914.1 Accepted alive Link to Nucleotide Sequence:NM_025638.2Link to Protein Sequence:NP_079914.1Re-query CCDS DB by Nucleotide ID:NM_025638Re-query CCDS DB by Protein ID:NP_079914Link to BLAST:NP_079914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079914.1 314 Q9CRY7 314 100% 0 0

Chromosomal Locations for CCDS 25206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87035173 87035295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87035592 87035643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87037831 87037890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87041788 87041921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87045127 87045216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87045756 87045874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87056792 87056837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87059425 87059560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87063899 87063941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87073836 87073977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTCGTCCACCGCGGCTTTTTGCCTTCTCTCTACTCTGGGGGGATATTTGGTCACCTCGTTCTTGTTGC
TTAAATACCCAGCGTTGCTGCACCAGAGAAAGAAACAGCGATTCCTCAGTAGGCACATCTCTCACCGCGG
AGGTGCTGGAGAAAACCTTGAGAACACAATGGCTGCCTTCCAGCACGCAGTTACCATTGGGACAGACATG
TTAGAACTGGACTGCCATATCACAAAAGATGAGCAAGTTGTAGTGTCACATGATGCAAACCTGAAGAGGT
CAACTGGGGTCAATGTAAACGTCTCTGATCTCAAATATTGTGAGCTCCCACCTTACCTTTGCAAGCTGGA
TGTCCCATTTCAGAGAGCCTGCAAGTGTGAGGGGAAAGATACCCGGATCCCCTTGCTGAAGGAAGTGTTT
GAGGCCTTCCCTGAGACCCCCATTAACATCGACATCAAAGTGAACAACAATGTGCTGATCAAGAAGGTCT
CAGAACTGGTGAAGCAGTATAAGCGAGAACATCTGACAGTGTGGGGCAATGCCAACTCTGAGATTGTAGA
CAAGTGTTACAAAGAGAACTCAGACATTCCTATACTCTTCAGCCTGCAGCGTGTTCTGCTCATCCTGGGC
TTGTTCTTCACCGGCCTCTTGCCCTTCGTGCCCATTCGAGAACAGTTCTTTGAAATCCCAATGCCCTCCA
TCATACTGAAGCTAAAAGAACCACACACTATATCCAAAGGTCATAAGTTTCTCATCTGGCTTTCTGATAC
CTTATTGATGCGGAAAGCTCTATTTGACCACCTCACCGCCCGGGGCATTCAAGTGTACGTTTGGGTTTTA
AATGAGGAATACGAGTACAAAAGAGCCTTTGATTTGGGAGCAACTGGAGTGATGACGGACTACCCAACCA
AGCTTAAGGATTTCTTAAACAATTTTTCAGCATAA

Translation (314 aa):
MSSTAAFCLLSTLGGYLVTSFLLLKYPALLHQRKKQRFLSRHISHRGGAGENLENTMAAFQHAVTIGTDM
LELDCHITKDEQVVVSHDANLKRSTGVNVNVSDLKYCELPPYLCKLDVPFQRACKCEGKDTRIPLLKEVF
EAFPETPINIDIKVNNNVLIKKVSELVKQYKREHLTVWGNANSEIVDKCYKENSDIPILFSLQRVLLILG
LFFTGLLPFVPIREQFFEIPMPSIILKLKEPHTISKGHKFLIWLSDTLLMRKALFDHLTARGIQVYVWVL
NEEYEYKRAFDLGATGVMTDYPTKLKDFLNNFSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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