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Report for CCDS49985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49985.1 Public Mus musculus 17 Vmn1r224 23 108 98 CCDS HistoryNCBI Gene:665525Re-query CCDS DB by CCDS ID:49985.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170076.1 ENSMUSP00000132957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170076.1Link to Ensembl Protein Viewer:ENSMUSP00000132957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170076Re-query CCDS DB by Protein ID:ENSMUSP00000132957
Original member Current member EBI ENSMUST00000233642.1 ENSMUSP00000156636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233642.1Link to Ensembl Protein Viewer:ENSMUSP00000156636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233642Re-query CCDS DB by Protein ID:ENSMUSP00000156636
Original member Current member EBI ENSMUST00000233980.1 ENSMUSP00000156898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233980.1Link to Ensembl Protein Viewer:ENSMUSP00000156898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233980Re-query CCDS DB by Protein ID:ENSMUSP00000156898
Original member Current member NCBI NM_001166735.1 NP_001160207.1 Accepted alive Link to Nucleotide Sequence:NM_001166735.1Link to Protein Sequence:NP_001160207.1Re-query CCDS DB by Nucleotide ID:NM_001166735Re-query CCDS DB by Protein ID:NP_001160207Link to BLAST:NP_001160207.1

Chromosomal Locations for CCDS 49985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20419163 20420059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGACCTCAAGGATTTGATAATAGGTACAGTGTTCTTATTTCAGAGTACAGTTGGAATTCTGGGAAATT
TCTCTCTTCTTACCAGCTACCTATTCAATTACTATAGTAAACATACAATAAAGACCACAAATTTGATTCT
TACACACCTATTCACAGCCAACTTTTTGATCCTTCTTTCTAAAGGACTGCTCCATACAATGCAAACTTTT
GGGCTAAAAGGATTTATCAATGACTTTGGCTGCAAATTCCTTTTGTATATTCAAAGACTGGGCAGAAACA
TGTCCATTAGTACCACCTGCTTCTTGAGTGTCTTCCAGGCCATCACCATCAGTCCTAGGACCTCTTTTTC
AATGAGTCTTAAACTCAAATCCCCAAATCATATTGGTCTCTTCACTTCTCTTTGGTGGATTCTCTACATG
GCATTAAATCTGATTTTTCCTGTTTATATGTATAACAAAGAGAACAGAAAGAACCTTACACATAAAAATC
ATTTCAAACACTGCTCCACTGTAGTTCATGATGATTTTATAAGCTCATTATATACTGCATTTATTGTTCT
TCCTGAAATTTTGTTTTCTTTCATTATCATCTGGTCCAGCAGCTCCATGGTTGTCGTTCTCTATATGCAC
AGGCAAAGCATTCAACATATCCACAGCATCAACATTGGCTCCAGAACATCTCCTGAGTCCAGAGCTACCC
ACAGGATACTGGCCTTGGTATCCACCTTTATAGGATTTTATGCCCTCTCTTCCATCTTACAAGGTTACAT
TGCTCTTGTATATAATCCTGGTTGGTGGCTGGTGAACATCACAGCAATCATTTCAATATGTTTTCCTACA
CTGGGACCTTTTGTGATGAATCATGACTCAACTAGGCCAAGATTAAGCTTTCTCTGA

Translation (298 aa):
MDLKDLIIGTVFLFQSTVGILGNFSLLTSYLFNYYSKHTIKTTNLILTHLFTANFLILLSKGLLHTMQTF
GLKGFINDFGCKFLLYIQRLGRNMSISTTCFLSVFQAITISPRTSFSMSLKLKSPNHIGLFTSLWWILYM
ALNLIFPVYMYNKENRKNLTHKNHFKHCSTVVHDDFISSLYTAFIVLPEILFSFIIIWSSSSMVVVLYMH
RQSIQHIHSINIGSRTSPESRATHRILALVSTFIGFYALSSILQGYIALVYNPGWWLVNITAIISICFPT
LGPFVMNHDSTRPRLSFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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