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Report for CCDS25385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25385.1 Public Mus musculus 11 Krtap3-3 23 108 98 CCDS HistoryNCBI Gene:66380Re-query CCDS DB by CCDS ID:25385.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092700.4 ENSMUSP00000090374.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092700.4Link to Ensembl Protein Viewer:ENSMUSP00000090374.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092700Re-query CCDS DB by Protein ID:ENSMUSP00000090374
Original member Current member NCBI NM_025524.2 NP_079800.1 Accepted alive Link to Nucleotide Sequence:NM_025524.2Link to Protein Sequence:NP_079800.1Re-query CCDS DB by Nucleotide ID:NM_025524Re-query CCDS DB by Protein ID:NP_079800Link to BLAST:NP_079800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079800.1 99 Q9D638 99 100% 0 0

Chromosomal Locations for CCDS 25385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99550510 99550809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCTTGCTGTGTTGCCCGCTGCTGCAGTGTCCCCACCGGCCCTGCCACCACCATCTGCTCCTCAGACA
AGTCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACCATTTGGCAGCTGGAGCCCACCTG
CTGTGACAACTGCCCCCCACCCTGCCACATCCCTCAGCCCTGTGTGCCCACCTGCTTCCTGCTCAACTCC
TGCCACCCAACCCCAGACCTGCTGACTGTCAACCTCACCACCTATGTGCAGCCAGGCTGTGAGGAGCCCT
GTGTCCCAAGGTGCTGCTGA

Translation (99 aa):
MACCVARCCSVPTGPATTICSSDKSCRCGVCLPSTCPHTIWQLEPTCCDNCPPPCHIPQPCVPTCFLLNS
CHPTPDLLTVNLTTYVQPGCEEPCVPRCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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