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Report for CCDS15556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15556.1 Public Mus musculus 1 Cox20 23 108 98 CCDS HistoryNCBI Gene:66359Re-query CCDS DB by CCDS ID:15556.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027781.6 ENSMUSP00000027781.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027781.6Link to Ensembl Protein Viewer:ENSMUSP00000027781.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027781Re-query CCDS DB by Protein ID:ENSMUSP00000027781
Original member Current member NCBI NM_025511.2 NP_079787.1 Accepted alive Link to Nucleotide Sequence:NM_025511.2Link to Protein Sequence:NP_079787.1Re-query CCDS DB by Nucleotide ID:NM_025511Re-query CCDS DB by Protein ID:NP_079787Link to BLAST:NP_079787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079787.1 117 Q9D7J4 117 100% 0 0

Chromosomal Locations for CCDS 15556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 178319170 178319208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178321745 178321859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178321942 178322005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178322481 178322616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCGGCCGCCCCGGAGCCCCACGAGACGGAGAAAAAGCCCTTCAAGCTCCTAGGTATTTTAGATGTTG
AGAACACTCCATGTGCTCGAGAATCTATACTCTATGGCTCATTAGGATCTATTGTGACTGGACTTGGACA
TTTCTTGGTGACCAGTAGAATTAGAAGATCATGTGATGTTGGAGTAGGAGGATTTATCCTGGTGACTTTA
GGATGCTGGTTCCACTGTAGGTATAATTTCGCTAAGCAGAGGATCCAGGAAAGAATTGCCAGAGAAGGAA
TAAAAAATAAGATTTTATATGAAAGCACCCACCTTGATCCTGAAAGAAAAATGAAGACCAACAACAGCAG
CTAA

Translation (117 aa):
MAAAPEPHETEKKPFKLLGILDVENTPCARESILYGSLGSIVTGLGHFLVTSRIRRSCDVGVGGFILVTL
GCWFHCRYNFAKQRIQERIAREGIKNKILYESTHLDPERKMKTNNSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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