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Report for CCDS15228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15228.1 Public Mus musculus 1 Tmem177 23 108 98 CCDS HistoryNCBI Gene:66343Re-query CCDS DB by CCDS ID:15228.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037906.5 ENSMUSP00000042416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037906.5Link to Ensembl Protein Viewer:ENSMUSP00000042416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037906Re-query CCDS DB by Protein ID:ENSMUSP00000042416
Original member Current member NCBI NM_175106.4 NP_780315.1 Accepted alive Link to Nucleotide Sequence:NM_175106.4Link to Protein Sequence:NP_780315.1Re-query CCDS DB by Nucleotide ID:NM_175106Re-query CCDS DB by Protein ID:NP_780315Link to BLAST:NP_780315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780315.1 311 Q8BPE4 311 100% 0 0

Chromosomal Locations for CCDS 15228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119910012 119910947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCTGGTCCTCTGTGGAGGGCTGCAGCCTTTATACAGAGACACAGAACAAGCCTATTGGTGGGTTCCT
GTGCAGGCCTGTTTGGGGTTCAAATCTCATTTCACCTCTTCCCAGATCCCATAGTCCAGTGGCTCTACCA
GTACTGGCCTCAGGGCCAACCAGCTCCTCTTTCCCCTCATCTGTGGAGCCTCTTCCAAGAGGTGCTAAAG
GACATAGGTGTCCCTTCGGGTCACTGCTACAAGCCTTTTACCGCCTTCACTTTTCAGCCTGTGAGTGCTG
GATTCCCACGGTTGCCTGCTGGGGCTGTGGTGGGAATCCCTGCCATCTTCCTGGGTGGCCCTGTGACCAA
CATTGAACACTCTGTGATCATACATGGGCAAAGAGTGGATTGGCAAAGCCCAGCAGGCACCAGGCTGAGA
GATGCCCTGACCATGTCTCATAATGCCCAGAAGTTTGCCTTGGCCAAGGAGGTGGTATACCTGGAGAGTG
GTGTGGCTGCCCTACAGACCCTGCCAGCCCCAGCTTGCCTAGCAGGAACATGGGCAATAAGTGTGGGTGC
CAAGCATGCCCTGGGGCTCTACGGAGGCCCCATGAGCTTGCGAACTGCCTTTAACTTGGTGGCAATAGTG
GTAGGCTATGTAGCCTATACCTTTTCCAAAGACTCTCTCACTCTTGCCCTGGAAGGCTGGCTGGACCGCC
GCACGGCCTCTCTGTCTGCAGCCTATGTCCAGGGTGGAGTGGAATTCTATGAGAAGATTCTGTCAGGAAA
CTTAGCCCTACGCAGTCTTTTGGGCAGACAAGGAGAAAAGCTGTATACACCAAGTGGAAACATTGTCCCC
AGACACTGGTTTCGCATCAACCATTTGCCCTACACCACCCGCCGGGACTCTCTACAACAGATGTGGAGGG
CAACAGTCAGCCCAGGCCGCTTCTGA

Translation (311 aa):
MAGPLWRAAAFIQRHRTSLLVGSCAGLFGVQISFHLFPDPIVQWLYQYWPQGQPAPLSPHLWSLFQEVLK
DIGVPSGHCYKPFTAFTFQPVSAGFPRLPAGAVVGIPAIFLGGPVTNIEHSVIIHGQRVDWQSPAGTRLR
DALTMSHNAQKFALAKEVVYLESGVAALQTLPAPACLAGTWAISVGAKHALGLYGGPMSLRTAFNLVAIV
VGYVAYTFSKDSLTLALEGWLDRRTASLSAAYVQGGVEFYEKILSGNLALRSLLGRQGEKLYTPSGNIVP
RHWFRINHLPYTTRRDSLQQMWRATVSPGRF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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