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Report for CCDS25421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25421.1 Public Mus musculus 11 P3h4 23 108 98 CCDS HistoryNCBI Gene:66180Re-query CCDS DB by CCDS ID:25421.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066489.12 ENSMUSP00000065278.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066489.12Link to Ensembl Protein Viewer:ENSMUSP00000065278.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066489Re-query CCDS DB by Protein ID:ENSMUSP00000065278
Original member NCBI NM_176830.2 NP_789800.1 Updated not alive Link to Nucleotide Sequence:NM_176830.2Link to Protein Sequence:NP_789800.1Re-query CCDS DB by Nucleotide ID:NM_176830Re-query CCDS DB by Protein ID:NP_789800
Current member NCBI NM_176830.3 NP_789800.1 Accepted alive Link to Nucleotide Sequence:NM_176830.3Link to Protein Sequence:NP_789800.1Re-query CCDS DB by Nucleotide ID:NM_176830Re-query CCDS DB by Protein ID:NP_789800Link to BLAST:NP_789800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789800.1 443 Q8K2B0 443 100% 0 0

Chromosomal Locations for CCDS 25421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100409122 100409144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100409363 100409507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100411114 100411197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100411729 100411874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100412701 100412829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100413609 100413780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100413927 100414079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100414177 100414656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCTCGCGGGGCGTGGGGGCTGCTGTGGCTGCTGCTGGGCAGCGCCGGGGCCCAGTACGAGAAATACA
GCTTCCGAGGATTCCCTCCGGAGGACCTGATGCCACTGGCCACGGCCTACGGCCACGCTCTGGAGCAATA
CGAAGGCGAAAGCTGGCGCGAGAGCGCGCGCTACCTGGAGGCGGCGCTGCGGCTGCACCGGCTGCTGCGC
GACAGCGAGGCCTTCTGCCACGCCAACTGTAGTGGCCCCGCCACCTCTCAGCCTCGGCCCGCGTCCGGCC
CGGACGGCGACCACGACGGCGATGGCGAGGACTGGGCTCGCGAGCTGCGGCTCTTCGGTCACGTCCTGGA
GCGCGCCGCCTGCCTGCGGCGCTGCAAGAAGACGCTGCCCGCCTTTCAAGTCCCTTACCCACCGCGGCAG
CTGCTGCGCGACTTCCAGAGCCGCCTGCCCTATCAGTACCTGCACTACGCGCACTTCAAGGCGAACCGAC
TGGAGAAGGCGGTGGCTGCGGCCTACACCTTCCTCCAGAGGAACCCCAAGCACGAGCTGACCGCCAAGTA
TCTCAACTACTACAGGGGGATGCTGGATATTGGAGATGAGTCCCTCACCGACCTGGAGGCCCAGCCCTAC
GAGGCTGTGTTCCTCCGGGCTGTGAAACTTTACAACAGCGGGGACTTTCGCAGCAGCACAGAAGACATGG
AGCGGGCCCTGGCTGAATATATGACGGTCTTTGCTCGGTGTCTAGCTGGCTGTGAGGGGGCCCACGAGCA
GGTAGACTTCAAGGACTTCTACCCAGCGATAGCAGATCTCTTCGCAGAATCCCTGCAGTGCAAGGTGGAC
TGTGAGACCAATCTCACCCCCAACGTAGGTGGCTTCTTTGTGGACAAGTTTGTGGCCACCATGTATCACT
ACCTGCAGTTTGCCTACTACAAACTGAATGATGTACGCCAGGCTGCCCGCAGTGCTGCTAGCTACATGCT
CTTTGACCCCAAGGACAGCGTTATGCAGCAGAACCTGGTATATTACCGCTTCCACCGGGCTCGCTGGGGC
CTTGAAGACGAGGACTTTCAACCCCGGGAGGAAGCTATGCTCTACCACAACCAGACCTCTGAGCTCCGGG
AGTTGCTAGACTTCACACACATGTACCTTCAGTCAGACGATGAGATGGAACTGGAGGAGACAGAATCACT
CCCAGAGCCTGAAGAACCTCTATCTGATGCTGAGTTCGAAGGCGAGGGCGACTATGAGGAAGGTCTCTAT
GCTGACTGGTGGCAAGAGCCAGAAGCCAAGGGTGACGAGGCCGAGGCCGAGCCAGAGCCTGAACTGACAT
AA

Translation (443 aa):
MARGAWGLLWLLLGSAGAQYEKYSFRGFPPEDLMPLATAYGHALEQYEGESWRESARYLEAALRLHRLLR
DSEAFCHANCSGPATSQPRPASGPDGDHDGDGEDWARELRLFGHVLERAACLRRCKKTLPAFQVPYPPRQ
LLRDFQSRLPYQYLHYAHFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGMLDIGDESLTDLEAQPY
EAVFLRAVKLYNSGDFRSSTEDMERALAEYMTVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVD
CETNLTPNVGGFFVDKFVATMYHYLQFAYYKLNDVRQAARSAASYMLFDPKDSVMQQNLVYYRFHRARWG
LEDEDFQPREEAMLYHNQTSELRELLDFTHMYLQSDDEMELEETESLPEPEEPLSDAEFEGEGDYEEGLY
ADWWQEPEAKGDEAEAEPEPELT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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