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Report for CCDS9157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9157.1 Public Homo sapiens 12 TMEM116 24 110 108 CCDS HistoryNCBI Gene:89894Re-query CCDS DB by CCDS ID:9157.1Re-query CCDS DB by GeneID:89894See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9157.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000550831.7 ENSP00000450377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000550831.7Link to Ensembl Protein Viewer:ENSP00000450377.1Re-query CCDS DB by Nucleotide ID:ENST00000550831Re-query CCDS DB by Protein ID:ENSP00000450377
Original member Current member NCBI NM_001294314.2 NP_001281243.1 Accepted alive Link to Nucleotide Sequence:NM_001294314.2Link to Protein Sequence:NP_001281243.1Re-query CCDS DB by Nucleotide ID:NM_001294314Re-query CCDS DB by Protein ID:NP_001281243Link to BLAST:NP_001281243.1
Original member Current member NCBI NM_138341.3 NP_612350.1 Accepted alive Link to Nucleotide Sequence:NM_138341.3Link to Protein Sequence:NP_612350.1Re-query CCDS DB by Nucleotide ID:NM_138341Re-query CCDS DB by Protein ID:NP_612350Link to BLAST:NP_612350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281243.1 245 Q8NCL8-1 245 100% 0 0
NP_612350.1 245 Q8NCL8-1 245 100% 0 0

Chromosomal Locations for CCDS 9157.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111931621 111931827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111932586 111932659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111933886 111934030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111936692 111936830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111937160 111937243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111938161 111938210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111943265 111943303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGAAACACACCCAGAGTGGACAGAGCACATCTCCACTGGTGATAGATTATACTTGTCGAGTTTGTCAAA
TGGCCTTTGTTTTCTCAAGCCTGATACCTCTGCTATTGATGACACCTGTATTCTGTCTGGGAAATACTAG
TGAATGTTTCCAAAACTTCAGTCAGAGCCACAAGTGTATCTTGATGCACTCACCACCATCAGCCATGGCT
GAACTTCCACCTTCTGCCAACACATCTGTCTGTAGCACACTTTATTTTTATGGTATCGCCATTTTCCTGG
GCAGCTTTGTACTCAGCCTCCTTACCATTATGGTCTTACTTATCCGAGCCCAGACATTGTATAAGAAGTT
TGTGAAGTCAACTGGCTTTCTGGGGAGTGAACAGTGGGCAGTGATTCACATTGTGGACCAACGGGTGCGC
TTCTACCCAGTGGCCTTCTTTTGCTGCTGGGGCCCAGCTGTCATTCTAATGATCATAAAGCTGACTAAGC
CACAGGACACCAAGCTTCACATGGCCCTTTATGTTCTCCAGGCTCTAACGGCAACATCTCAGGGTCTACT
CAACTGTGGAGTATATGGCTGGACGCAGCACAAATTCCACCAACTAAAGCAGGAGGCTCGGCGTGATGCA
GATACCCAGACACCATTATTATGCTCACAGAAGAGATTCTATAGCAGGGGCTTAAATTCACTGGAATCCA
CCCTGACTTTTCCTGCCAGTACTTCTACCATTTTTTGA

Translation (245 aa):
MKHTQSGQSTSPLVIDYTCRVCQMAFVFSSLIPLLLMTPVFCLGNTSECFQNFSQSHKCILMHSPPSAMA
ELPPSANTSVCSTLYFYGIAIFLGSFVLSLLTIMVLLIRAQTLYKKFVKSTGFLGSEQWAVIHIVDQRVR
FYPVAFFCCWGPAVILMIIKLTKPQDTKLHMALYVLQALTATSQGLLNCGVYGWTQHKFHQLKQEARRDA
DTQTPLLCSQKRFYSRGLNSLESTLTFPASTSTIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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