NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23279.1 Public Mus musculus 9 Tipin 23 108 98 CCDS HistoryNCBI Gene:66131Re-query CCDS DB by CCDS ID:23279.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23279.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034964.6 ENSMUSP00000034964.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034964.6Link to Ensembl Protein Viewer:ENSMUSP00000034964.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034964Re-query CCDS DB by Protein ID:ENSMUSP00000034964
Original member Current member EBI ENSMUST00000216594.1 ENSMUSP00000149833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216594.1Link to Ensembl Protein Viewer:ENSMUSP00000149833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216594Re-query CCDS DB by Protein ID:ENSMUSP00000149833
Original member NCBI NM_001324556.1 NP_001311485.1 Updated not alive Link to Nucleotide Sequence:NM_001324556.1Link to Protein Sequence:NP_001311485.1Re-query CCDS DB by Nucleotide ID:NM_001324556Re-query CCDS DB by Protein ID:NP_001311485
Current member NCBI NM_001324556.2 NP_001311485.1 Accepted alive Link to Nucleotide Sequence:NM_001324556.2Link to Protein Sequence:NP_001311485.1Re-query CCDS DB by Nucleotide ID:NM_001324556Re-query CCDS DB by Protein ID:NP_001311485Link to BLAST:NP_001311485.1
Original member NCBI NM_001324557.1 NP_001311486.1 Updated not alive Link to Nucleotide Sequence:NM_001324557.1Link to Protein Sequence:NP_001311486.1Re-query CCDS DB by Nucleotide ID:NM_001324557Re-query CCDS DB by Protein ID:NP_001311486
Current member NCBI NM_001324557.2 NP_001311486.1 Accepted alive Link to Nucleotide Sequence:NM_001324557.2Link to Protein Sequence:NP_001311486.1Re-query CCDS DB by Nucleotide ID:NM_001324557Re-query CCDS DB by Protein ID:NP_001311486Link to BLAST:NP_001311486.1
Original member NCBI NM_001324558.1 NP_001311487.1 Updated not alive Link to Nucleotide Sequence:NM_001324558.1Link to Protein Sequence:NP_001311487.1Re-query CCDS DB by Nucleotide ID:NM_001324558Re-query CCDS DB by Protein ID:NP_001311487
Current member NCBI NM_001324558.2 NP_001311487.1 Accepted alive Link to Nucleotide Sequence:NM_001324558.2Link to Protein Sequence:NP_001311487.1Re-query CCDS DB by Nucleotide ID:NM_001324558Re-query CCDS DB by Protein ID:NP_001311487Link to BLAST:NP_001311487.1
Original member NCBI NM_025372.4 NP_079648.1 Updated not alive Link to Nucleotide Sequence:NM_025372.4Link to Protein Sequence:NP_079648.1Re-query CCDS DB by Nucleotide ID:NM_025372Re-query CCDS DB by Protein ID:NP_079648
Current member NCBI NM_025372.5 NP_079648.1 Accepted alive Link to Nucleotide Sequence:NM_025372.5Link to Protein Sequence:NP_079648.1Re-query CCDS DB by Nucleotide ID:NM_025372Re-query CCDS DB by Protein ID:NP_079648Link to BLAST:NP_079648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311485.1 278 Q91WA1 278 100% 0 0
NP_001311486.1 278 Q91WA1 278 100% 0 0
NP_001311487.1 278 Q91WA1 278 100% 0 0
NP_079648.1 278 Q91WA1 278 100% 0 0

Chromosomal Locations for CCDS 23279.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64288114 64288243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64289710 64289782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64290374 64290449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64294010 64294132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64294323 64294386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64301042 64301248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64304307 64304470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGTTAGAGCAAGAAGAAAATGGCTTGTTTGAAATACCAGATTATGAACATGTAGAGGATGAAACTTTTC
CTCCCTTCCCACCTCCGGCCTCGCCAGAGAGAGATCCTGCAGACGCTGAACCTGAGGAAGGATCAGGGAG
TGGAGTACCTGTTCCGCCAAAGAGAACAGTTAAAAGGAATCTACCTAAGCTAGATGCTACGAGATTGACT
TCAGAGAGAGGGCTTCCAGCCTTAAGGCATGTGTTTGATAAGACGAAATTCAAGGGGAAGGGTCATGAGG
CTGAAGACTTGAAAACGCTAATCAGACACATGGAGCACTGGGCACATAGGCTATTCCCCAAGCTGCAATT
TGAAGATTTTATTGACAGAGTCGAAAACCTAGGAAATAAAAAGGAGGTTCAGACCTGTTTAAAACGAATT
CGACTTGATCTGCCTATTGTACATGAAGATTTTGTTAACAATAATGATGAAGTTGGAGAAGCTAATGGCC
CAGATGTATCTGCTACTGGATTTGATCCCTTCTTGACAAGTTCTTCTGACAGCAGGAAGTTTGCTTCTGA
ACCAACTAGAAGCCTAACAGAAGAGCAGCAACAGAGAATTGAGAGAAATAAACAGCTGGCCTTGGAAAGA
AGGCAGGCAAAGCTACTGAGTAATAGCCAGTCCCTAGAAAATGATGTGACAGTTGAAGAGAACAGTACTG
GTGAGGATCAAGAAGAGTCAAATGGATTAAACATAGACACTGCTGATGGTCCACATGATGTTCCTTTCGC
CAGTACACATGAAGAGGAACAGTGCAAAGCAGAGGAGACACAACTGGACCATACTAACTTAGACTAA

Translation (278 aa):
MLEQEENGLFEIPDYEHVEDETFPPFPPPASPERDPADAEPEEGSGSGVPVPPKRTVKRNLPKLDATRLT
SERGLPALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRI
RLDLPIVHEDFVNNNDEVGEANGPDVSATGFDPFLTSSSDSRKFASEPTRSLTEEQQQRIERNKQLALER
RQAKLLSNSQSLENDVTVEENSTGEDQEESNGLNIDTADGPHDVPFASTHEEEQCKAEETQLDHTNLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH