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Report for CCDS38644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38644.1 Public Mus musculus 3 Ube2d3 23 108 98 CCDS HistoryNCBI Gene:66105Re-query CCDS DB by CCDS ID:38644.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106291.9 ENSMUSP00000101898.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106291.9Link to Ensembl Protein Viewer:ENSMUSP00000101898.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106291Re-query CCDS DB by Protein ID:ENSMUSP00000101898
Original member Current member EBI ENSMUST00000166033.5 ENSMUSP00000130096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166033.5Link to Ensembl Protein Viewer:ENSMUSP00000130096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166033Re-query CCDS DB by Protein ID:ENSMUSP00000130096
Original member Current member EBI ENSMUST00000197539.4 ENSMUSP00000143065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197539.4Link to Ensembl Protein Viewer:ENSMUSP00000143065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197539Re-query CCDS DB by Protein ID:ENSMUSP00000143065
Original member Current member EBI ENSMUST00000199613.4 ENSMUSP00000143301.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199613.4Link to Ensembl Protein Viewer:ENSMUSP00000143301.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199613Re-query CCDS DB by Protein ID:ENSMUSP00000143301
Original member Current member EBI ENSMUST00000197859.4 ENSMUSP00000143608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197859.4Link to Ensembl Protein Viewer:ENSMUSP00000143608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197859Re-query CCDS DB by Protein ID:ENSMUSP00000143608
Original member Current member NCBI NM_001356594.1 NP_001343523.1 Accepted alive Link to Nucleotide Sequence:NM_001356594.1Link to Protein Sequence:NP_001343523.1Re-query CCDS DB by Nucleotide ID:NM_001356594Re-query CCDS DB by Protein ID:NP_001343523Link to BLAST:NP_001343523.1
Original member Current member NCBI NM_001356595.1 NP_001343524.1 Accepted alive Link to Nucleotide Sequence:NM_001356595.1Link to Protein Sequence:NP_001343524.1Re-query CCDS DB by Nucleotide ID:NM_001356595Re-query CCDS DB by Protein ID:NP_001343524Link to BLAST:NP_001343524.1
Original member Current member NCBI NM_001356596.1 NP_001343525.1 Accepted alive Link to Nucleotide Sequence:NM_001356596.1Link to Protein Sequence:NP_001343525.1Re-query CCDS DB by Nucleotide ID:NM_001356596Re-query CCDS DB by Protein ID:NP_001343525Link to BLAST:NP_001343525.1
Original member Current member NCBI NM_001356597.1 NP_001343526.1 Accepted alive Link to Nucleotide Sequence:NM_001356597.1Link to Protein Sequence:NP_001343526.1Re-query CCDS DB by Nucleotide ID:NM_001356597Re-query CCDS DB by Protein ID:NP_001343526Link to BLAST:NP_001343526.1
Original member Current member NCBI NM_025356.5 NP_079632.1 Accepted alive Link to Nucleotide Sequence:NM_025356.5Link to Protein Sequence:NP_079632.1Re-query CCDS DB by Nucleotide ID:NM_025356Re-query CCDS DB by Protein ID:NP_079632Link to BLAST:NP_079632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343523.1 147 P61079 147 100% 0 0
NP_001343524.1 147 P61079 147 100% 0 0
NP_001343525.1 147 P61079 147 100% 0 0
NP_001343526.1 147 P61079 147 100% 0 0
NP_079632.1 147 P61079 147 100% 0 0

Chromosomal Locations for CCDS 38644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 135439775 135439798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135455186 135455249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135455346 135455377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135458798 135458875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135459975 135460080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135462950 135463043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 135465195 135465240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCGCTGAAACGGATTAATAAGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAG
GTCCAGTTGGAGATGACATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGG
TGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACA
ACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTAAGATCACAGTGGT
CTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGACGA
CCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGTACAACAGAATATCTCGGGAA
TGGACTCAGAAGTATGCCATGTGA

Translation (147 aa):
MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT
TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE
WTQKYAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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