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Report for CCDS19986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19986.1 Public Mus musculus 6 Chchd3 23 108 98 CCDS HistoryNCBI Gene:66075Re-query CCDS DB by CCDS ID:19986.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066379.10 ENSMUSP00000070149.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066379.10Link to Ensembl Protein Viewer:ENSMUSP00000070149.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066379Re-query CCDS DB by Protein ID:ENSMUSP00000070149
Original member Current member NCBI NM_025336.2 NP_079612.1 Accepted alive Link to Nucleotide Sequence:NM_025336.2Link to Protein Sequence:NP_079612.1Re-query CCDS DB by Nucleotide ID:NM_025336Re-query CCDS DB by Protein ID:NP_079612Link to BLAST:NP_079612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079612.1 227 Q9CRB9 227 100% 0 0

Chromosomal Locations for CCDS 19986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32792903 32792926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32803890 32804025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32852145 32852215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32892292 32892375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32968201 32968318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33008483 33008564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33049337 33049424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33060000 33060080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGCGGGACCGCTAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAACGAGAACATCACCGTGGTGA
AGGGCATCCGGCTTTCAGAAAATGTGATCGACCGGATGAAGGAGTCCTCTCCATCTGGCTCTAAGTCTCA
GCGATATTCCAGCGTTTATGGTGCTTCAGTTTCTGATGAAGATTTGAAAAGAAGAGTAGCTGAGGAGCTG
GCATTGGAGCAAGCCAAAAAGGAGTCAGAACACCAGAGACGCCTTAAGCAAGCAAGGGACCTAGAAAGAG
AAAGGGCTGCAGCCAATGAGCAGCTGACCAGAGCTGTCCTTCGGGAAAGAATATCCAGTGAAGAGGAGCG
CATGAAGGCGAAGCATCTGGCTCGGCAGCTGGAAGAGAAAGACCGAGTGATGCGGAAGCAGGATGCATTC
TACAAAGAGCAGCTGGCCAGACTGGAGGAGAGGAGCTCAGAGTTCTACAAAGTCACCACCGAGGAGTATC
AGAAAGCTGCTGAAGAGGTGGAAGCCAAGTTCAAGCGGTATGAATATCATCCAGTCTGTGCAGATCTGCA
GACCAAAATCCTCCAGTGTTACCGTCAGAACACCCAGCAGACTCTCAGCTGCTCTGCTCTGGCTAGCCAA
TACATGCACTGTGTCAACCATGCCAAACAGAGCATGCTGGAGAAGGGAGGCTAA

Translation (227 aa):
MGGTASTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSSVYGASVSDEDLKRRVAEEL
ALEQAKKESEHQRRLKQARDLERERAAANEQLTRAVLRERISSEEERMKAKHLARQLEEKDRVMRKQDAF
YKEQLARLEERSSEFYKVTTEEYQKAAEEVEAKFKRYEYHPVCADLQTKILQCYRQNTQQTLSCSALASQ
YMHCVNHAKQSMLEKGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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