NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23214.1 Public Mus musculus 9 Snupn 23 108 98 CCDS HistoryNCBI Gene:66069Re-query CCDS DB by CCDS ID:23214.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068856.4 ENSMUSP00000067200.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068856.4Link to Ensembl Protein Viewer:ENSMUSP00000067200.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068856Re-query CCDS DB by Protein ID:ENSMUSP00000067200
Original member Current member NCBI NM_178374.4 NP_848461.1 Accepted alive Link to Nucleotide Sequence:NM_178374.4Link to Protein Sequence:NP_848461.1Re-query CCDS DB by Nucleotide ID:NM_178374Re-query CCDS DB by Protein ID:NP_848461Link to BLAST:NP_848461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848461.1 358 Q80W37 358 100% 0 0

Chromosomal Locations for CCDS 23214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56957019 56957176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56962996 56963143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56970254 56970358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56970590 56970686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56975213 56975310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56978019 56978096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56980845 56980925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56982662 56982973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGAAGAACTGAGCCAAGCCCTGGCTAGTAGCTTTTCTGTGTCTCAAGAACTGAACAGCACAGCTGCCC
CCCACCCACGCCTGTGTCAATACAAGTCCAAGTACAGTTCCTTGGAGCAGAGTGAGCGGCGGCGCCAGCT
ACTGGAGCTGCAGAAATCCAAGCGGTTGGATTATGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGG
ACAGGTATGGAGAGTGGGGAAGAGGAAAACAAGAAAGATGAAGAGGAAATGGACATAGACCCTAGCAAGA
AGTTACCAAAACGCTATGCTAATCAATTGATGCTTTCTGAGTGGTTAATTGACGTCCCTTCAGATTTGGG
GCAAGAATGGATTGTGGTTGTGTGTCCTGTTGGGAAAAGAGCCCTTATCGTGGCCTCCAGGGGTTCAACA
AGTGCCTACACTAAGAGTGGCTACTGTGTCAATAGGTTTTCTTCCCTTCTGCCCGGAGGCAACAGGAGAA
ACTCAACAACAGCCAAAGACTACACCATTCTGGATTGCATTTACAGTGAGGTGAATCAGACATACTATGT
TTTGGATGTGATGTGCTGGCGGGGACATCCTTTTTATGACTGTCAGACTGATTTCCGATTCTACTGGATG
CATTCAAAGTTACCAGAAGAAGAAGGGCTTGGAGAGAAAACCAAGATTAATCCTTTTAAGTTTGTGGGGC
TAAAGAATTTCCCGTGTACCCCTGAGAGCCTGTGTGAGGTGCTGTCTATGGATTTTCCTTTTGAGGTAGA
TGGGCTGCTCTTCTACCATAAACAGACCCACTATAGCCCTGGGAGTACTCCTCTGGTGGGTTGGCTGCGC
CCCTACATGGTGTCAGATATTCTGGGTGTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACG
CTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACACAAAGGAGAAACTCACACA
CAAGGCTTCTGAGAATGGCCACTATGAGCTGGAGCACCTGTCTACTCCCAAGTTAAGAAATCCTCCCCAC
AGCTCTGAGAGCCTCATGGACAACTAA

Translation (358 aa):
MEELSQALASSFSVSQELNSTAAPHPRLCQYKSKYSSLEQSERRRQLLELQKSKRLDYVNHARRLAEDDW
TGMESGEEENKKDEEEMDIDPSKKLPKRYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGST
SAYTKSGYCVNRFSSLLPGGNRRNSTTAKDYTILDCIYSEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWM
HSKLPEEEGLGEKTKINPFKFVGLKNFPCTPESLCEVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLR
PYMVSDILGVAVPAGPLTTKPEYAGHQLQQIIEHKRSQEDTKEKLTHKASENGHYELEHLSTPKLRNPPH
SSESLMDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH