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Report for CCDS38494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38494.1 Public Mus musculus 3 Pygo2 23 108 98 CCDS HistoryNCBI Gene:68911Re-query CCDS DB by CCDS ID:38494.1Re-query CCDS DB by GeneID:68911See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107413.1 ENSMUSP00000103036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107413.1Link to Ensembl Protein Viewer:ENSMUSP00000103036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107413Re-query CCDS DB by Protein ID:ENSMUSP00000103036
Original member NCBI NM_001293763.1 NP_001280692.1 Updated not alive Link to Nucleotide Sequence:NM_001293763.1Link to Protein Sequence:NP_001280692.1Re-query CCDS DB by Nucleotide ID:NM_001293763Re-query CCDS DB by Protein ID:NP_001280692
Current member NCBI NM_001293763.2 NP_001280692.1 Accepted alive Link to Nucleotide Sequence:NM_001293763.2Link to Protein Sequence:NP_001280692.1Re-query CCDS DB by Nucleotide ID:NM_001293763Re-query CCDS DB by Protein ID:NP_001280692Link to BLAST:NP_001280692.1
Original member NCBI NM_001293766.2 NP_001280695.1 Updated not alive Link to Nucleotide Sequence:NM_001293766.2Link to Protein Sequence:NP_001280695.1Re-query CCDS DB by Nucleotide ID:NM_001293766Re-query CCDS DB by Protein ID:NP_001280695
Current member NCBI NM_001293766.3 NP_001280695.1 Accepted alive Link to Nucleotide Sequence:NM_001293766.3Link to Protein Sequence:NP_001280695.1Re-query CCDS DB by Nucleotide ID:NM_001293766Re-query CCDS DB by Protein ID:NP_001280695Link to BLAST:NP_001280695.1
Original member NCBI NM_001293767.1 NP_001280696.1 Updated not alive Link to Nucleotide Sequence:NM_001293767.1Link to Protein Sequence:NP_001280696.1Re-query CCDS DB by Nucleotide ID:NM_001293767Re-query CCDS DB by Protein ID:NP_001280696
Current member NCBI NM_001293767.2 NP_001280696.1 Accepted alive Link to Nucleotide Sequence:NM_001293767.2Link to Protein Sequence:NP_001280696.1Re-query CCDS DB by Nucleotide ID:NM_001293767Re-query CCDS DB by Protein ID:NP_001280696Link to BLAST:NP_001280696.1
Original member Current member NCBI NM_026869.3 NP_081145.1 Accepted alive Link to Nucleotide Sequence:NM_026869.3Link to Protein Sequence:NP_081145.1Re-query CCDS DB by Nucleotide ID:NM_026869Re-query CCDS DB by Protein ID:NP_081145Link to BLAST:NP_081145.1

Chromosomal Locations for CCDS 38494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89431135 89431176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89432450 89433514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAAGAGCCCTGAAAAGAAGCGAAGAAAGTCCAATACTCAGGGTCCTGCATATTCACATCTGACGGAGT
TCGCCCCACCCCCGACCCCCATGGTGGATCATCTGGTCGCTTCTAACCCTTTTGAGGATGATTTCGGAGC
CCCTAAAGTGGGGGGCGCAGGCCCTCCGTTCCTCGGCAGTCCGGTGCCCTTTGGAGGCTTTCGTGTACAG
GGGGGCATGGCAGGCCAGGTACCCCCAGGCTACGGCACTGGAGGAGGAGGGGGTCCCCAGCCACTTCGTC
GGCAGCCCCCTCCTTTTCCCCCCAACCCTATGGGTCCAGCTTTTAATATGCCCCCTCAGGGCCCTGGCTA
CCCGCCCCCTGGCAACATGAACTTTCCCAGTCAACCCTTCAACCAGTCTCTGGGCCAAAACTTTAGCCCA
CCTGGTGGGCAGGTGATGCCAGGCCCAGTAGGCGGATTTGGTCCCATGATCTCACCGACCATGGGACAGC
CTCCTAGAGGGGAGCTGGGTCCTCCTCCTCTCCCCCAACGCTTTACCCAACCAGGAGCACCTTTTGGTCC
TTCTCTTCAGAGACCTGGTCAGGGACTCCCCAGCCTGCCCCCCAACACAAGTCCCTTCCCTGGTCCAGAC
CCTGGTTTTCCTGGCCCTGGCGGTGAGGATGGTGGGAAGCCCTTGAACCCACCGGCTCCCACCGCCTTTC
CCCAGGAGCCCCATTCGGGCTCCCCCGCTGCTGCTGTCAATGGGAATCAGCCCAGTTTCCCCCCTAGCAG
CAGTGGTCGAGGTGGGGGCACTCCAGATGCCAACAGTCTGGCACCCCCCGGCAAGGCAGGGGGAGGCTCA
GGGCCCCAGCCTCCCCCAGGCCTGGTGTACCCCTGCGGTGCCTGCCGTAGTGAGGTAAATGATGACCAGG
ATGCCATTCTGTGTGAGGCCTCCTGCCAGAAGTGGTTTCACCGCGAGTGCACCGGCATGACCGAGAGTGC
CTACGGCCTGCTGACCACCGAGGCCTCTGCCGTCTGGGCCTGTGATCTTTGCCTCAAGACCAAGGAGATC
CAGTCTGTCTACATCCGAGAGGGCATGGGCCAGTTGGTGGCTGCTAACGATGGGTGA

Translation (368 aa):
MKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPKVGGAGPPFLGSPVPFGGFRVQ
GGMAGQVPPGYGTGGGGGPQPLRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFNQSLGQNFSP
PGGQVMPGPVGGFGPMISPTMGQPPRGELGPPPLPQRFTQPGAPFGPSLQRPGQGLPSLPPNTSPFPGPD
PGFPGPGGEDGGKPLNPPAPTAFPQEPHSGSPAAAVNGNQPSFPPSSSGRGGGTPDANSLAPPGKAGGGS
GPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEI
QSVYIREGMGQLVAANDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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