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Report for CCDS86440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86440.1 Public Homo sapiens 15 GOLGA8T 24 110 108 CCDS HistoryNCBI Gene:653075Re-query CCDS DB by CCDS ID:86440.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000569052.2 ENSP00000455826.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000569052.2Link to Ensembl Protein Viewer:ENSP00000455826.1Re-query CCDS DB by Nucleotide ID:ENST00000569052Re-query CCDS DB by Protein ID:ENSP00000455826
Original member Current member NCBI NM_001355469.2 NP_001342398.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001355469.2Link to Protein Sequence:NP_001342398.1Re-query CCDS DB by Nucleotide ID:NM_001355469Re-query CCDS DB by Protein ID:NP_001342398Link to BLAST:NP_001342398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342398.1 631 H3BQL2 631 100% 0 0

Chromosomal Locations for CCDS 86440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 30135149 30135196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30136866 30136985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30137881 30137940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30138122 30138202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30139058 30139096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30139359 30139406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30139495 30139579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30139675 30139784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30140842 30140928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30141035 30141142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30141338 30141425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30141802 30142058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30142314 30142382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30143606 30143681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30144113 30144204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30144779 30144876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30144959 30145056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30145152 30145307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30145392 30145567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCAGAAGAAACTCAACACAACAAATTGGCTGCAGCCAAGAAAAAGTTAAAAGAATATTGGCAGAAAA
ACAGCCCTAGAGTTCCAGCAGGAGCGAACAGGAACAGGAAAACAAATGGCAGTATCCCTGAGAAAGCCAC
TTCTGGTGGTTGCCAGCCACCTAGGGATTCAGCAACAGGTTTCCACAGGGAAGGCCCTACATCATCTGCT
ACCCTGAAAGATCTGGAGAGCCCGTGCCAAGAACGAGCAGTAGTCCTGGATTCAAGGTCCGTAGAAATCA
GTCAACTGAAGAACACCATCAAATCTCTGAAACAACAGAAGAAACAAGTGGAACATCAGCTGGAAGAAGA
AAAGAAAGCAAACAACAAGAAACAGAAAGCCAAAAGGGTGCTAGAGGTTCAAATCCAGACATTGAACATA
CAGAAAGAGGAACTAAATACGGACCTGTACCACATGAAACGTTCTCTCAGATACTTTGAAGAAAAGTCCA
AGGATCTGGCTGTCCGCCTGCAACATTCATTGCAGCGTAAAGGAGAGTTAGAGAGTGTTCTCTCTAATGT
CATGGCCACACAGAAGAAGAAGGCAAACCAGTTGTCCAGCCGCAGCAAAGCACGTACGGAGTGGAAGTTA
GAGCAGTCCATGCGGGAGGAGACACTACTGAAAGTGCAGCTGACACAGTTGAAGGAGTCATTTCAACAAG
TCCAATTAGAAAGAGATGAGTATTCTGAACATCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGATGAG
AAAAATGTCGCAGGAGATTTGCACATTAAAGAAAGAGAAGCAGCAAGATATGCGTCGGGTAGAGGAGCTG
GAGAGGAGCTTGTCCAAACTCAAAAACCAGATGGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCT
CTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTAGAGAGAGTGGCAGGAGAGCTCCAGGCCCAGGTCAA
AAAGAATCAGCGCATAAGTCTCCTGAACCAGCGACAAGAAGAGAGGATTCAGGAGCAGGAAGAGAGGCTT
CGGAAGCAGGAGGAGAGGATTCAGGAGCAGCACAAGAGCCTTCAGCAGCTGGCCAAGCCACAGAGCGTCT
TCGAGGAGCCGAACAATGAGAACAAGAACGCACTGCAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAA
GCTTGGCGAGGAGCACCTGGAAGCTGCCAGCCAGCAGAACCAGCAGCTAACGGCCCAGCTGAGCCTCATG
GCTCTCCCTGGGGAAGGACACGGAGGAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCAGCCCATGC
CGAGTGTCCCAGAGGACCTGGAGAGCAGGGAGGCCATGAGCAGCTTTATGGACCACCTGAAGGAGAAGGC
AGACCTGAGTGAGCTGGTGAAAAAAGAACTCTGCTTCATCCACCACTGGCGAGACAGACGCCATCAGAAA
ACCCATCACCTTTTATCAGAACCAGGGGGCTGTGCCAAAGATGCGGCACTGGGAGGAGGACACCATCAGG
CTGGAGCTCAGGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGCAGATGGTATTGCGGCTTACAGCAA
CTACAACAATGGGCACAGAAAATTCCTGGCCGCTGCCCACAACCCTGCTGATGAGCCCGGTCCAGGAGCC
CCAGCTCCCCAGGAGCTTGGGGCTGCAGACAAGCATGGTGATCTTCGTGAGGTGAGCCTCACCTCCTCTG
CCCAAGGAGAGGCCAGGGAGGATCCTCTCCTTGACAAGCCTACTGCACAGCCGATCGTGCAGGACCACCA
GGAGCACCCAGGCTTGGGCAGCAACTGCTGTGTGCCATTCTTGTGCTGGGCTTGGCTGCCAAGAAGAAGG
AGATAA

Translation (631 aa):
MAEETQHNKLAAAKKKLKEYWQKNSPRVPAGANRNRKTNGSIPEKATSGGCQPPRDSATGFHREGPTSSA
TLKDLESPCQERAVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQIQTLNI
QKEELNTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSNVMATQKKKANQLSSRSKARTEWKL
EQSMREETLLKVQLTQLKESFQQVQLERDEYSEHLKGERARWQQRMRKMSQEICTLKKEKQQDMRRVEEL
ERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGELQAQVKKNQRISLLNQRQEERIQEQEERL
RKQEERIQEQHKSLQQLAKPQSVFEEPNNENKNALQLEQQVKELQEKLGEEHLEAASQQNQQLTAQLSLM
ALPGEGHGGEHLDSEGEEAPQPMPSVPEDLESREAMSSFMDHLKEKADLSELVKKELCFIHHWRDRRHQK
THHLLSEPGGCAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNPADEPGPGA
PAPQELGAADKHGDLREVSLTSSAQGEAREDPLLDKPTAQPIVQDHQEHPGLGSNCCVPFLCWAWLPRRR
R


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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