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Report for CCDS43001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43001.1 Public Homo sapiens 22 CASTOR1 24 110 108 CCDS HistoryNCBI Gene:652968Re-query CCDS DB by CCDS ID:43001.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407689.8 ENSP00000384183.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407689.8Link to Ensembl Protein Viewer:ENSP00000384183.4Re-query CCDS DB by Nucleotide ID:ENST00000407689Re-query CCDS DB by Protein ID:ENSP00000384183
Original member Current member NCBI NM_001037666.3 NP_001032755.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037666.3Link to Protein Sequence:NP_001032755.1Re-query CCDS DB by Nucleotide ID:NM_001037666Re-query CCDS DB by Protein ID:NP_001032755Link to BLAST:NP_001032755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032755.1 329 Q8WTX7 329 100% 0 0

Chromosomal Locations for CCDS 43001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30285620 30285688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30285832 30285926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30286016 30286098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30286263 30286376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30286825 30286948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30287155 30287287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30287373 30287560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30288706 30288776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30289385 30289497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAGCTGCACATCCTAGAACACCGGGTGCGGGTGCTGAGCGTCGCCCGTCCCGGTCTCTGGCTCTACA
CCCACCCGCTCATCAAGCTGCTCTTCCTGCCCCGCCGCAGCCGGTGCAAGTTCTTCAGCCTGACGGAGAC
CCCTGAGGATTACACGCTTATGGTGGACGAGGAGGGCTTTAAAGAGCTGCCCCCATCTGAGTTCCTGCAA
GTAGCTGAGGCCACATGGCTGGTGCTGAACGTGTCGTCTCACAGCGGTGCGGCAGTGCAGGCTGCTGGGG
TCACCAAGATCGCCCGTTCGGTCATCGCGCCACTGGCCGAGCACCACGTGTCTGTGCTGATGCTGTCCAC
TTACCAGACGGACTTCATCCTGGTGCGGGAGCAGGACCTGTCCGTGGTGATCCACACGCTGGCCCAGGAG
TTCGACATTTACCGCGAGGTGGGCGGAGAGCCTGTGCCTGTGACGAGGGATGATTCCAGCAATGGCTTTC
CCCGCACTCAGCATGGGCCCAGCCCCACGGTGCATCCCATCCAGAGCCCACAGAACCGCTTCTGTGTCCT
CACACTGGACCCTGAGACGCTTCCAGCCATCGCCACCACCCTCATAGATGTCCTCTTCTACTCGCACAGC
ACCCCCAAGGAGGCAGCCTCTAGCAGTCCTGAACCCAGCTCCATCACGTTCTTTGCCTTCTCCCTCATCG
AGGGTTATATCTCCATTGTCATGGATGCTGAAACACAGAAAAAGTTCCCCAGTGACCTCCTGCTGACCAG
CTCCTCGGGGGAGCTGTGGAGGATGGTGCGCATCGGTGGACAGCCCCTGGGCTTTGATGAATGTGGCATC
GTGGCACAGATTGCAGGTCCCCTGGCTGCCGCTGACATCTCTGCCTACTACATCAGCACCTTCAACTTCG
ACCACGCCCTGGTGCCCGAGGACGGTATCGGCAGCGTCATCGAGGTCCTCCAGCGGCGGCAGGAAGGCCT
GGCTTCCTGA

Translation (329 aa):
MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGFKELPPSEFLQ
VAEATWLVLNVSSHSGAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQTDFILVREQDLSVVIHTLAQE
FDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQSPQNRFCVLTLDPETLPAIATTLIDVLFYSHS
TPKEAASSSPEPSSITFFAFSLIEGYISIVMDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGI
VAQIAGPLAAADISAYYISTFNFDHALVPEDGIGSVIEVLQRRQEGLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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