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Report for CCDS39011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39011.1 Public Mus musculus 5 Tmem243 23 108 98 CCDS HistoryNCBI Gene:652925Re-query CCDS DB by CCDS ID:39011.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115365.2 ENSMUSP00000111022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115365.2Link to Ensembl Protein Viewer:ENSMUSP00000111022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115365Re-query CCDS DB by Protein ID:ENSMUSP00000111022
Original member Current member NCBI NM_001081029.1 NP_001074498.1 Accepted alive Link to Nucleotide Sequence:NM_001081029.1Link to Protein Sequence:NP_001074498.1Re-query CCDS DB by Nucleotide ID:NM_001081029Re-query CCDS DB by Protein ID:NP_001074498Link to BLAST:NP_001074498.1

Chromosomal Locations for CCDS 39011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 9101318 9101395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9116480 9116530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9117459 9117563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9118454 9118576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGAGGACTTTGCTACCAGGACCTACGGGACCAGCGGCCTGGATAACAGACCTCTGTTCGGGGAGACGT
CTGCCAAGGACCGAATCATCAATTTAGTTGTTGGCAGCTTAACCACCTTGTTGATTCTAGTCACACTGAT
CAGTGCTTTTGTGTTCCCTCAACTACCTCCCAAACCACTGAATATATTTTTTGCTGTCTGCATCTCTTTG
AGTAGTATTACTGCCTGCATACTTATCTACTGGTATCGACAAGGAGACTTAGAACCGAAATTTAGAAATC
TAATTTACTATATCTTATTTTCTATCATCATGTTATGTATATGTGCAAACTTGTACTTCCATGATGTGGG
AAGGTGA

Translation (118 aa):
MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTTLLILVTLISAFVFPQLPPKPLNIFFAVCISL
SSITACILIYWYRQGDLEPKFRNLIYYILFSIIMLCICANLYFHDVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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