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Report for CCDS17820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17820.1 Public Mus musculus 3 Ndst4 23 108 98 CCDS HistoryNCBI Gene:64580Re-query CCDS DB by CCDS ID:17820.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173932.7 ENSMUSP00000133341.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173932.7Link to Ensembl Protein Viewer:ENSMUSP00000133341.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173932Re-query CCDS DB by Protein ID:ENSMUSP00000133341
Original member NCBI NM_022565.2 NP_072087.2 Updated not alive Link to Nucleotide Sequence:NM_022565.2Link to Protein Sequence:NP_072087.2Re-query CCDS DB by Nucleotide ID:NM_022565Re-query CCDS DB by Protein ID:NP_072087
Current member NCBI NM_022565.3 NP_072087.2 Accepted alive Link to Nucleotide Sequence:NM_022565.3Link to Protein Sequence:NP_072087.2Re-query CCDS DB by Nucleotide ID:NM_022565Re-query CCDS DB by Protein ID:NP_072087Link to BLAST:NP_072087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072087.2 872 Q9EQW8 872 100% 0 0

Chromosomal Locations for CCDS 17820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 125437784 125438761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125561423 125561510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125570742 125570896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125609467 125609652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125611505 125611633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125683140 125683322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125697905 125698001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125708082 125708205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125710049 125710223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125713304 125713474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125714550 125714659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125722100 125722202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125724651 125724770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2619 nt):
ATGAATCTTATTTTAAAGTTTCGAAGAAGCTTTCGAACACTGATTGTTCTCTTAGCTACTTTTTGCTTGG
TGAGCATCCTCATTTCTGCCTACTTCCTGTACTCTGGCTACAAACAGGAAATGACACTTATTGAAACGAC
TGCAGAAGCAGAGTGTGCTGACATCAAAGACCTCCCTTATCGGTCTATAGAGCTGAGAACCATCAAGCCT
ATTGATACATCCAAAACTGACCCCACTGTCCTTCTCTTTGTAGAGAGCCAGTATTCGCAACTTGGTCAAG
ATATTATAGCAATCTTGGAGTCCAGTCGGTTTCAATACCAGATGGTCATTGCTCCAGGCAAGGGAGACAT
ACCGCCTCTTACCGATAGTGGCAAAGGGAAGTACACATTGATTATTTATGAAAATATTCTGAAGTACGTC
AGCATGGACTCATGGAACCGGGAGCTTTTAGAAAAATACTGTATAGAATACAGTGTTAGCATAATTGGTT
TTCATAAAGCCAATGAGAACAGTTTACCAACTACACAACTGAAAGGGTTTCCTTTGAACTTATTCAATAA
CGTAGCTCTGAAGGACTGCTCTGTGAACCCCCAGTCTCCTCTGCTCCATATTACCAAAGGCCCCAAAGTT
GAAAAGGGACCTCTTCCTGGGGAAGACTGGACAATTTTCCAGTATAACCATTCTACCTATCAGCCAGTGC
TTTTAACTGAGTTACAGTCAGAAAAGTCCCTCTCTTTCTTGTCCAGCCAAACACTTTATGCGACAATTAT
TCAGGATCTGGGGCTTCATGACGGGATTCAGCGAGTTCTTTTTGGTAACAACTTGAACTTTTGGTTGCAC
AAGCTCATTTTCATAGACGCCATCTCCTTCTTGTCGGGGAAGAGGTTGACACTGTCCTTGGACAGGTACA
TCCTTGTGGACATTGATGACATATTTGTGGGGAAGGAGGGCACGAGAATGAATGTCAAAGATGTGAAGGC
ATTACTAGAGACTCAAAATTTACTGCGCACTCAGGTTGCAAATTTTACCTTCAACCTTGGATTTTCAGGG
AAGTTTTACCACACAGGAACCGAAGAAGAGGATGAAGGTGACGACCTTCTGCTGAGGTCTGTGGATGAAT
TCTGGTGGTTTCCTCACATGTGGAGTCACATGCAGCCCCACCTCTTCCACAATGAATCATCTTTAGTGGA
ACAGATGATTCTCAACAAAGAATTTGCCCTGGAACATGGAATTCCGATCAACCTGGGCTACGCAGTGGCC
CCACATCACTCAGGGGTCTACCCAGTCCATATTCAGTTGTATGCAGCTTGGAAGAAAGTCTGGGGTATTC
AGGTCACCAGCACTGAAGAGTACCCACATCTGAAACCTGCGCGGTACAGGAAGGGCTTCATTCATAATAG
CATCATGGTCCTCCCTCGACAGACCTGTGGGCTGTTCACACATACTATTTTCTACAAGGAGTATCCAGGA
GGACCTCAAGAATTGGATAAAAGTATCAAAGGAGGTGAACTCTTCCTCACAATCCTTCTAAATCCAATCA
GCATTTTCATGACACATCTTTCTAACTATGGAAATGACCGCCTCGGCTTGTACACCTTTGTGAACTTGGC
CAACTTTGTGCACAGCTGGACCAACTTGAAACTGCAGACCCTGCCTCCAGTGCAACTGGCCCACAAATAC
TTCGAGCTCTTCCCTGAGCAGAAAGACCCTCTCTGGCAGAATCCATGCGACGATAAACGACACAAAGACA
TCTGGTCCAGGGAGAAAACCTGTGACCATTTACCGAAATTCCTTGTGATTGGGCCACAGAAGACAGGAAC
AACTGCACTTTATTTATTTCTTCTAATGCACCCCTCCATCATCAGCAATCTTCCTAGCCCCAAAACCTTT
GAAGAAGTTCAATTTTTTAATGGCAACAACTATCACAAGGGAATTGAGTGGTATATGGACTTTTTCCCCA
CTCCTTCCAACATTACCAGTGATTTCCTATTTGAAAAGAGTGCTAACTACTTCCACTCAGAAGAGGCTCC
CAAGAGGGCTGCATCTCTTGTTCCCAAAGCCAAGATCATTACTATCCTCATAGACCCCTCGGACAGGGCA
TATTCTTGGTACCAGCACCAACGATCTCATGAAGATCCAGCTGCCCTGAGGTTCAATTTCTATGAAGTTA
TCACAACAGGACATTGGGCCCCTCCTGATTTAAAAACATTGCAGAGGAGATGTCTGGTGCCTGGGTGGTA
TGCAGTGCACATAGAAAGATGGCTGGCCTACTTTTCTACTTCCCAGTTGCTAATTATTGATGGACAACAG
CTGAGATCTGACCCAGCTACTGTGATGGATGAAGTCCAGAAGTTTCTAGGAGTTACACCTCATTATAATT
ACTCGGAAGCACTAACGTTTGATCCCCAGAAAGGCTTTTGGTGTCAGCTACTAGAAGGAGGAAAAACCAA
ATGCCTTGGGAAAAGCAAAGGCCGAAAATACCCGCCCATGGATTCAGAGTCCAGAACTTTCCTCTCCAGC
TACTACCGCGACCACAACGTGGAACTCTCGAAGCTGCTGCACAGGCTGGGGCAGCCTCTGCCCTCGTGGC
TGAGACAGGAGCTGCAGAAAGTGAGGTAG

Translation (872 aa):
MNLILKFRRSFRTLIVLLATFCLVSILISAYFLYSGYKQEMTLIETTAEAECADIKDLPYRSIELRTIKP
IDTSKTDPTVLLFVESQYSQLGQDIIAILESSRFQYQMVIAPGKGDIPPLTDSGKGKYTLIIYENILKYV
SMDSWNRELLEKYCIEYSVSIIGFHKANENSLPTTQLKGFPLNLFNNVALKDCSVNPQSPLLHITKGPKV
EKGPLPGEDWTIFQYNHSTYQPVLLTELQSEKSLSFLSSQTLYATIIQDLGLHDGIQRVLFGNNLNFWLH
KLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGKEGTRMNVKDVKALLETQNLLRTQVANFTFNLGFSG
KFYHTGTEEEDEGDDLLLRSVDEFWWFPHMWSHMQPHLFHNESSLVEQMILNKEFALEHGIPINLGYAVA
PHHSGVYPVHIQLYAAWKKVWGIQVTSTEEYPHLKPARYRKGFIHNSIMVLPRQTCGLFTHTIFYKEYPG
GPQELDKSIKGGELFLTILLNPISIFMTHLSNYGNDRLGLYTFVNLANFVHSWTNLKLQTLPPVQLAHKY
FELFPEQKDPLWQNPCDDKRHKDIWSREKTCDHLPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTF
EEVQFFNGNNYHKGIEWYMDFFPTPSNITSDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRA
YSWYQHQRSHEDPAALRFNFYEVITTGHWAPPDLKTLQRRCLVPGWYAVHIERWLAYFSTSQLLIIDGQQ
LRSDPATVMDEVQKFLGVTPHYNYSEALTFDPQKGFWCQLLEGGKTKCLGKSKGRKYPPMDSESRTFLSS
YYRDHNVELSKLLHRLGQPLPSWLRQELQKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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