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Report for CCDS87347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87347.1 Public Homo sapiens 5 SMIM23 24 110 108 CCDS HistoryNCBI Gene:644994Re-query CCDS DB by CCDS ID:87347.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523047.4 ENSP00000430818.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000523047.4Link to Ensembl Protein Viewer:ENSP00000430818.4Re-query CCDS DB by Nucleotide ID:ENST00000523047Re-query CCDS DB by Protein ID:ENSP00000430818
Original member Current member EBI ENST00000639838.1 ENSP00000490990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000639838.1Link to Ensembl Protein Viewer:ENSP00000490990.1Re-query CCDS DB by Nucleotide ID:ENST00000639838Re-query CCDS DB by Protein ID:ENSP00000490990
Original member Current member NCBI NM_001289970.2 NP_001276899.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001289970.2Link to Protein Sequence:NP_001276899.1Re-query CCDS DB by Nucleotide ID:NM_001289970Re-query CCDS DB by Protein ID:NP_001276899Link to BLAST:NP_001276899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276899.1 172 A6NLE4 172 100% 0 0

Chromosomal Locations for CCDS 87347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 171785872 171785976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 171790230 171790281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 171790482 171790549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 171790795 171791088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCAACCCAGCAAGTGGACAGCAGAAGGCAGGTGGCAGCAGAGCAGGTGGCAGCCCAGCTGCTTGAAC
GGAGAAGGGGCAGCCACTGTGATGACGAGAAGCAGACGCTGTTGGCATTGCTGATCTTGGTGCTGTACTT
GAGCACAGAGATATGGGGAAGCAGTTGGGAGGTGTCAGAAAGGATCAGAGAATGTAACTACTACCAGAAT
CTTGCAGTTCCCCAGGGGCTTGAATATCAGACCAACGAGCCCTCAGAAGAACCGATAAAGACCATCAGGA
ACTGGCTGAAGGAGAAGTTGCATGTCTTCTCGGAGAAGTTAGAGGAAGAGGTGCAGCAGCTGGAGCAGCT
AGCGTGGGACCTGGAACTGTGGCTGGATGCTCTTCTGGGAGAGCCACACCAGGAGGAGCACTGCTCCACA
TATAAAAGTCACTTGTGGGAGTGGGCCTGGGCCCTGGGGAGAGAGCACAAAGGTGGGGAGGGGTTGCTAG
AGATTTCTCTAAGCGGGGCAGAGCTCTGA

Translation (172 aa):
MATQQVDSRRQVAAEQVAAQLLERRRGSHCDDEKQTLLALLILVLYLSTEIWGSSWEVSERIRECNYYQN
LAVPQGLEYQTNEPSEEPIKTIRNWLKEKLHVFSEKLEEEVQQLEQLAWDLELWLDALLGEPHQEEHCST
YKSHLWEWAWALGREHKGGEGLLEISLSGAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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