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Report for CCDS45614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45614.1 Public Homo sapiens 17 PIRT 24 110 108 CCDS HistoryNCBI Gene:644139Re-query CCDS DB by CCDS ID:45614.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45614.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580256.3 ENSP00000462046.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000580256.3Link to Ensembl Protein Viewer:ENSP00000462046.1Re-query CCDS DB by Nucleotide ID:ENST00000580256Re-query CCDS DB by Protein ID:ENSP00000462046
Original member Current member NCBI NM_001101387.2 NP_001094857.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101387.2Link to Protein Sequence:NP_001094857.1Re-query CCDS DB by Nucleotide ID:NM_001101387Re-query CCDS DB by Protein ID:NP_001094857Link to BLAST:NP_001094857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094857.1 137 P0C851 137 100% 0 0

Chromosomal Locations for CCDS 45614.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 10825232 10825645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGACGATGGAGACTCTCCCCAAGGTTCTAGAGGTCGATGAGAAGTCTCCAGAAGCCAAGGACCTGCTGC
CCAGCCAGACCGCCAGCTCCCTGTGCATCAGCTCCAGGAGCGAGTCTGTCTGGACCACCACCCCCAGGAG
TAACTGGGAAATCTACCGCAAGCCCATCGTTATCATGTCAGTGGGCGGTGCCATCCTGCTTTTCGGCGTG
GTCATCACCTGCTTGGCCTACACCTTGAAGCTGAGTGACAAGAGTCTCTCCATCCTCAAAATGGTAGGGC
CTGGCTTCCTGTCCCTGGGACTCATGATGCTGGTGTGCGGGCTGGTGTGGGTGCCCATCATCAAAAAGAA
ACAGAAGCACAGACAGAAGTCGAATTTCTTACGCAGCCTCAAGTCCTTCTTCCTGACTCGCTGA

Translation (137 aa):
MTMETLPKVLEVDEKSPEAKDLLPSQTASSLCISSRSESVWTTTPRSNWEIYRKPIVIMSVGGAILLFGV
VITCLAYTLKLSDKSLSILKMVGPGFLSLGLMMLVCGLVWVPIIKKKQKHRQKSNFLRSLKSFFLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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